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  5. AMTR_s00018p00255680

AMTR_s00018p00255680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00018.171

Description : Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001228 (Archaeplastida) Phylogenetic Tree(s): OG0001228_tree ,
OG_05_0002282 (LandPlants) Phylogenetic Tree(s): OG_05_0002282_tree ,
OG_06_0003035 (SeedPlants) Phylogenetic Tree(s): OG_06_0003035_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00018p00255680
Cluster HCCA: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
AT1G64680 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.04 Archaeplastida
AT4G01995 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 Archaeplastida
GSVIVT01019663001 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.05 Archaeplastida
GSVIVT01028138001 No alias Beta-carotene isomerase D27, chloroplastic... 0.1 Archaeplastida
LOC_Os08g02210.2 No alias Beta-carotene isomerase D27, chloroplastic... 0.08 Archaeplastida
MA_167711g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_18999g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp6g03970.1 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.03 Archaeplastida
Pp3c26_11090V3.1 No alias No annotation 0.03 Archaeplastida
Smo173467 No alias Phytohormones.strigolactone.synthesis.DWARF27... 0.03 Archaeplastida
Smo99098 No alias Beta-carotene isomerase D27, chloroplastic... 0.02 Archaeplastida
Solyc06g084610.4.1 No alias Beta-carotene isomerase D27, chloroplastic... 0.05 Archaeplastida
Solyc08g008630.4.1 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.08 Archaeplastida
Zm00001e029191_P001 No alias Beta-carotene isomerase D27, chloroplastic... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001505 regulation of neurotransmitter levels IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004356 glutamate-ammonia ligase activity IEP Neighborhood
MF GO:0004372 glycine hydroxymethyltransferase activity IEP Neighborhood
MF GO:0004618 phosphoglycerate kinase activity IEP Neighborhood
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006541 glutamine metabolic process IEP Neighborhood
BP GO:0006542 glutamine biosynthetic process IEP Neighborhood
BP GO:0006544 glycine metabolic process IEP Neighborhood
BP GO:0006563 L-serine metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
MF GO:0009496 plastoquinol--plastocyanin reductase activity IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016860 intramolecular oxidoreductase activity IEP Neighborhood
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
MF GO:0019203 carbohydrate phosphatase activity IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0030151 molybdenum ion binding IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
MF GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity IEP Neighborhood
BP GO:0042133 neurotransmitter metabolic process IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050308 sugar-phosphatase activity IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0052880 oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR025114 DUF4033 151 234
No external refs found!