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  5. Smo439663

Smo439663


Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.NUP205 scaffold nucleoporin


Gene families : OG0003770 (Archaeplastida) Phylogenetic Tree(s): OG0003770_tree ,
OG_05_0003597 (LandPlants) Phylogenetic Tree(s): OG_05_0003597_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo439663
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00040040 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.05 Archaeplastida
Cpa|evm.model.tig00000880.31 No alias No description available 0.02 Archaeplastida
Gb_31636 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.03 Archaeplastida
LOC_Os02g10790.1 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.04 Archaeplastida
LOC_Os02g10794.1 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.04 Archaeplastida
MA_102119g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.03 Archaeplastida
MA_10433042g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.02 Archaeplastida
MA_23099g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.05 Archaeplastida
Mp6g01090.1 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.03 Archaeplastida
Pp3c4_20350V3.1 No alias Protein of unknown function (DUF3414) 0.04 Archaeplastida
Solyc12g006480.2.1 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.07 Archaeplastida
Zm00001e014006_P001 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR021827 Nup186/Nup192/Nup205 3 377
No external refs found!