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  5. AMTR_s00019p00039970

AMTR_s00019p00039970 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.19

Description : Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0008852 (Archaeplastida) Phylogenetic Tree(s): OG0008852_tree ,
OG_05_0008546 (LandPlants) Phylogenetic Tree(s): OG_05_0008546_tree ,
OG_06_0005697 (SeedPlants) Phylogenetic Tree(s): OG_06_0005697_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00039970
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
AT4G31850 PGR3 proton gradient regulation 3 0.04 Archaeplastida
GSVIVT01035975001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 Archaeplastida
Zm00001e038060_P001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP Neighborhood
MF GO:0004325 ferrochelatase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004556 alpha-amylase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006783 heme biosynthetic process IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 899 930
IPR002885 Pentatricopeptide_repeat 303 335
IPR002885 Pentatricopeptide_repeat 584 614
IPR002885 Pentatricopeptide_repeat 344 373
IPR002885 Pentatricopeptide_repeat 484 514
IPR002885 Pentatricopeptide_repeat 204 234
IPR002885 Pentatricopeptide_repeat 449 479
IPR002885 Pentatricopeptide_repeat 621 670
IPR002885 Pentatricopeptide_repeat 240 282
IPR002885 Pentatricopeptide_repeat 770 809
IPR002885 Pentatricopeptide_repeat 1076 1116
IPR002885 Pentatricopeptide_repeat 1006 1050
IPR002885 Pentatricopeptide_repeat 831 879
IPR002885 Pentatricopeptide_repeat 377 424
IPR002885 Pentatricopeptide_repeat 939 984
IPR002885 Pentatricopeptide_repeat 516 564
No external refs found!