AMTR_s00019p00042050 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.22

Description : Protein translocation.chloroplast.thylakoid membrane SRP insertion system.STIC2 stromal sorting factor


Gene families : OG0004614 (Archaeplastida) Phylogenetic Tree(s): OG0004614_tree ,
OG_05_0004896 (LandPlants) Phylogenetic Tree(s): OG_05_0004896_tree ,
OG_06_0007915 (SeedPlants) Phylogenetic Tree(s): OG_06_0007915_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00042050
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Cre10.g458550 No alias Protein translocation.chloroplast.thylakoid membrane SRP... 0.02 Archaeplastida
Pp3c1_1160V3.1 No alias Uncharacterised BCR, YbaB family COG0718 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Neighborhood
CC GO:0000445 THO complex part of transcription export complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
InterPro domains Description Start Stop
IPR004401 YbaB/EbfC 95 186
No external refs found!