1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00019p00058670

AMTR_s00019p00058670 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.36

Description : Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase


Gene families : OG0000535 (Archaeplastida) Phylogenetic Tree(s): OG0000535_tree ,
OG_05_0000281 (LandPlants) Phylogenetic Tree(s): OG_05_0000281_tree ,
OG_06_0000124 (SeedPlants) Phylogenetic Tree(s): OG_06_0000124_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00058670
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01020793001 No alias EP1-like glycoprotein 4 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01030018001 No alias Polygalacturonase OS=Nicotiana tabacum 0.06 Archaeplastida
GSVIVT01030030001 No alias Polygalacturonase OS=Gossypium hirsutum 0.05 Archaeplastida
LOC_Os06g40890.1 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 Archaeplastida
LOC_Os08g23790.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 Archaeplastida
Solyc10g047570.2.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 Archaeplastida
Zm00001e030526_P001 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 44 373
No external refs found!