Smo442384

Description : RNA biosynthesis.transcriptional activation.GRF-GIF transcriptional complex.GRF transcription factor component

Gene families : OG0000341 (Archaeplastida) Phylogenetic Tree(s): OG0000341_tree ,
OG_05_0000223 (LandPlants) Phylogenetic Tree(s): OG_05_0000223_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo442384
Cluster	HCCA: Cluster_67

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00257830	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	Archaeplastida
AMTR_s00040p00189460	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	Archaeplastida
AMTR_s00065p00092420	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	Archaeplastida
AT2G36400	GRF3, AtGRF3	growth-regulating factor 3	0.03	Archaeplastida
AT3G52910	GRF4, AtGRF4	growth-regulating factor 4	0.03	Archaeplastida
AT5G53660	AtGRF7, GRF7	growth-regulating factor 7	0.03	Archaeplastida
GSVIVT01016762001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	Archaeplastida
GSVIVT01033800001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	Archaeplastida
Gb_20400	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Gb_20443	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
LOC_Os02g45570.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
LOC_Os03g51970.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
LOC_Os12g29980.1	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
MA_111469g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
MA_137877g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
MA_18836g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
MA_33661g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
MA_88101g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Mp8g16900.1	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
Pp3c12_3720V3.1	No alias	growth-regulating factor 2	0.06	Archaeplastida
Pp3c17_1780V3.1	No alias	growth-regulating factor 2	0.04	Archaeplastida
Smo412762	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	Archaeplastida
Solyc03g082430.1.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Solyc04g077510.4.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc07g041640.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Solyc08g005430.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
Solyc08g079800.4.1	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
Solyc10g083510.2.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Zm00001e007049_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
Zm00001e012104_P002	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Zm00001e012291_P001	No alias	Growth-regulating factor 9 OS=Oryza sativa subsp....	0.02	Archaeplastida
Zm00001e023769_P003	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
Zm00001e029851_P005	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
Zm00001e030774_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
Zm00001e036657_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0004857	enzyme inhibitor activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
MF	GO:0008092	cytoskeletal protein binding	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
MF	GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	IEP	Neighborhood
MF	GO:0051015	actin filament binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR014977	WRC_dom	305	346

External Links

No external refs found!

Smo442384

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation