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  5. Smo442688

Smo442688


Description : RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Symplekin/Pta1 component


Gene families : OG0001799 (Archaeplastida) Phylogenetic Tree(s): OG0001799_tree ,
OG_05_0002801 (LandPlants) Phylogenetic Tree(s): OG_05_0002801_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo442688
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00088050 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.06 Archaeplastida
AT1G27595 No alias CONTAINS InterPro DOMAIN/s: Symplekin tight junction... 0.03 Archaeplastida
AT5G01400 ESP4 HEAT repeat-containing protein 0.05 Archaeplastida
GSVIVT01009243001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 Archaeplastida
GSVIVT01009244001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.04 Archaeplastida
GSVIVT01011157001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 Archaeplastida
Gb_23976 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 Archaeplastida
Gb_24672 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
LOC_Os01g49940.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
LOC_Os07g49320.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
MA_10426054g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
MA_10432378g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
MA_34105g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 Archaeplastida
MA_433916g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
MA_8459784g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp6g03410.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
Pp3c2_10640V3.1 No alias HEAT repeat-containing protein 0.05 Archaeplastida
Solyc04g076900.2.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 Archaeplastida
Solyc04g076910.3.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.07 Archaeplastida
Solyc09g005330.3.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.09 Archaeplastida
Solyc09g005340.3.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 Archaeplastida
Zm00001e020082_P004 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
Zm00001e035946_P001 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0004371 glycerone kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR032460 Symplekin/Pta1_N 111 342
No external refs found!