Description : RNA processing.RNA modification.pseudouridylation.RsuA-type rRNA pseudouridine synthase
Gene families : OG0003651 (Archaeplastida) Phylogenetic Tree(s): OG0003651_tree ,
OG_05_0007210 (LandPlants) Phylogenetic Tree(s): OG_05_0007210_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Smo45172 | |
Cluster | HCCA: Cluster_100 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G39140 | SVR1 | pseudouridine synthase family protein | 0.02 | Archaeplastida | |
Cpa|evm.model.tig00000241.76 | No alias | RNA processing.RNA... | 0.01 | Archaeplastida | |
Gb_12891 | No alias | rRNA pseudouridine synthase (RsuA) | 0.04 | Archaeplastida | |
Pp3c7_13640V3.1 | No alias | pseudouridine synthase family protein | 0.03 | Archaeplastida | |
Zm00001e000423_P001 | No alias | rRNA pseudouridine synthase (RsuA) | 0.06 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
MF | GO:0004045 | aminoacyl-tRNA hydrolase activity | IEP | Neighborhood |
MF | GO:0004190 | aspartic-type endopeptidase activity | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
BP | GO:0006801 | superoxide metabolic process | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
MF | GO:0008565 | protein transporter activity | IEP | Neighborhood |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032977 | membrane insertase activity | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
MF | GO:0051082 | unfolded protein binding | IEP | Neighborhood |
MF | GO:0070001 | aspartic-type peptidase activity | IEP | Neighborhood |
BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002942 | S4_RNA-bd | 20 | 62 |
No external refs found! |