Smo45172


Description : RNA processing.RNA modification.pseudouridylation.RsuA-type rRNA pseudouridine synthase


Gene families : OG0003651 (Archaeplastida) Phylogenetic Tree(s): OG0003651_tree ,
OG_05_0007210 (LandPlants) Phylogenetic Tree(s): OG_05_0007210_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo45172
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AT2G39140 SVR1 pseudouridine synthase family protein 0.02 Archaeplastida
Cpa|evm.model.tig00000241.76 No alias RNA processing.RNA... 0.01 Archaeplastida
Gb_12891 No alias rRNA pseudouridine synthase (RsuA) 0.04 Archaeplastida
Pp3c7_13640V3.1 No alias pseudouridine synthase family protein 0.03 Archaeplastida
Zm00001e000423_P001 No alias rRNA pseudouridine synthase (RsuA) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 20 62
No external refs found!