Smo48392

Description : ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana

Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0000889 (LandPlants) Phylogenetic Tree(s): OG_05_0000889_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo48392
Cluster	HCCA: Cluster_161

Target	Alias	Description	ECC score	Gene Family Method
AT5G37560	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
Cpa\|evm.model.tig00001128.21	No alias	No description available	0.02	Archaeplastida
Gb_28418	No alias	plant-specific E3 ubiquitin ligase (RSL/RFA)	0.03	Archaeplastida
LOC_Os09g11170.1	No alias	plant-specific E3 ubiquitin ligase (RSL/RFA)	0.02	Archaeplastida
Mp5g21180.1	No alias	plant-specific E3 ubiquitin ligase (RSL/RFA)	0.02	Archaeplastida
Solyc03g115920.3.1	No alias	plant-specific E3 ubiquitin ligase (RSL/RFA)	0.04	Archaeplastida
Zm00001e022192_P001	No alias	plant-specific E3 ubiquitin ligase (RSL/RFA)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	Interproscan

Type	GO Term	Name	Evidence	Source
MF	GO:0016301	kinase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002867	IBR_dom	76	133

External Links

No external refs found!