AMTR_s00019p00180640 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.187

Description : Solute transport.channels.GLR ligand-gated cation channel

Gene families : OG0000085 (Archaeplastida) Phylogenetic Tree(s): OG0000085_tree ,
OG_05_0010165 (LandPlants) Phylogenetic Tree(s): OG_05_0010165_tree ,
OG_06_0009072 (SeedPlants) Phylogenetic Tree(s): OG_06_0009072_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00019p00180640
Cluster	HCCA: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00140120	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.06	Archaeplastida
AMTR_s00019p00186040	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.07	Archaeplastida
AMTR_s00021p00172130	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.04	Archaeplastida
AMTR_s00021p00176450	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.05	Archaeplastida
AT2G24710	GLR2.3, ATGLR2.3	glutamate receptor 2.3	0.03	Archaeplastida
AT2G24720	GLR2.2, ATGLR2.2	glutamate receptor 2.2	0.06	Archaeplastida
AT2G29120	GLR2.7, ATGLR2.7	glutamate receptor 2.7	0.03	Archaeplastida
AT4G31710	GLR2.4, ATGLR2.4	glutamate receptor 2.4	0.06	Archaeplastida
AT5G11180	ATGLR2.6, GLR2.6	glutamate receptor 2.6	0.06	Archaeplastida
AT5G11210	GLR2.5, ATGLR2.5	glutamate receptor 2.5	0.04	Archaeplastida
AT5G48400	ATGLR1.2, GLR1.2	Glutamate receptor family protein	0.06	Archaeplastida
AT5G48410	ATGLR1.3, GLR1.3	glutamate receptor 1.3	0.05	Archaeplastida
GSVIVT01014245001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.04	Archaeplastida
GSVIVT01021155001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.04	Archaeplastida
GSVIVT01021161001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.04	Archaeplastida
GSVIVT01022297001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.04	Archaeplastida
GSVIVT01030602001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.04	Archaeplastida
GSVIVT01033132001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.01	Archaeplastida
GSVIVT01033137001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.02	Archaeplastida
GSVIVT01033150001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
GSVIVT01033156001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
GSVIVT01033160001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
Gb_09070	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
Gb_16129	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Gb_20613	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Gb_27767	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Gb_28362	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
Gb_28364	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Gb_39752	No alias	ligand-gated cation channel (GLR)	0.01	Archaeplastida
LOC_Os02g54640.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
LOC_Os07g01310.1	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
LOC_Os09g26144.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
MA_10428186g0010	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
MA_10428521g0010	No alias	ligand-gated cation channel (GLR)	0.05	Archaeplastida
MA_10429132g0010	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
MA_141267g0010	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
MA_212254g0010	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
MA_339780g0010	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
MA_391859g0010	No alias	ligand-gated cation channel (GLR)	0.07	Archaeplastida
MA_43501g0010	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
MA_6222576g0010	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
MA_88153g0010	No alias	ligand-gated cation channel (GLR)	0.05	Archaeplastida
MA_9039812g0010	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
MA_9796468g0010	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
MA_9896648g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp1g01040.1	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Solyc02g077290.2.1	No alias	ligand-gated cation channel (GLR)	0.05	Archaeplastida
Solyc05g045650.4.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc06g063170.3.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
Solyc06g063180.3.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
Solyc07g052400.3.1	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
Solyc08g006500.4.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0004888	transmembrane signaling receptor activity	None	Extended
MF	GO:0004970	ionotropic glutamate receptor activity	IEA	Interproscan
MF	GO:0005215	transporter activity	IEA	Interproscan
MF	GO:0005216	ion channel activity	None	Extended
MF	GO:0005230	extracellular ligand-gated ion channel activity	None	Extended
MF	GO:0005231	excitatory extracellular ligand-gated ion channel activity	None	Extended
MF	GO:0005234	extracellularly glutamate-gated ion channel activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	IEA	Interproscan
MF	GO:0008066	glutamate receptor activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022824	transmitter-gated ion channel activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022835	transmitter-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
CC	GO:0030288	outer membrane-bounded periplasmic space	IEA	Interproscan
MF	GO:0030594	neurotransmitter receptor activity	None	Extended
MF	GO:0038023	signaling receptor activity	None	Extended
CC	GO:0042597	periplasmic space	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
MF	GO:0005507	copper ion binding	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0009690	cytokinin metabolic process	IEP	Neighborhood
BP	GO:0010817	regulation of hormone levels	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
BP	GO:0034754	cellular hormone metabolic process	IEP	Neighborhood
BP	GO:0042445	hormone metabolic process	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001320	Iontro_rcpt	22	273
IPR001638	Solute-binding_3/MltF_N	96	243

External Links

No external refs found!

AMTR_s00019p00180640 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation