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  5. AMTR_s00019p00201260

AMTR_s00019p00201260 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.235

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0000210 (SeedPlants) Phylogenetic Tree(s): OG_06_0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00201260
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00267100 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AMTR_s00045p00146180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AT1G17950 BW52, ATMYB52, MYB52 myb domain protein 52 0.02 Archaeplastida
AT1G34670 AtMYB93, MYB93 myb domain protein 93 0.02 Archaeplastida
AT1G63910 MYB103, AtMYB103 myb domain protein 103 0.02 Archaeplastida
AT1G79180 ATMYB63, MYB63 myb domain protein 63 0.02 Archaeplastida
AT2G02820 MYB88, AtMYB88 myb domain protein 88 0.03 Archaeplastida
AT3G01140 MYB106, NOK, AtMYB106 myb domain protein 106 0.03 Archaeplastida
AT3G13540 ATMYB5, MYB5 myb domain protein 5 0.02 Archaeplastida
AT3G53200 AtMYB27, MYB27 myb domain protein 27 0.02 Archaeplastida
AT4G01680 MYB55, AtMYB55 myb domain protein 55 0.03 Archaeplastida
AT4G22680 AtMYB85, MYB85 myb domain protein 85 0.02 Archaeplastida
AT5G10280 ATMYB64, ATMYB92, MYB92 myb domain protein 92 0.03 Archaeplastida
AT5G14340 AtMYB40, MYB40 myb domain protein 40 0.02 Archaeplastida
AT5G26660 MYB86, ATMYB86 myb domain protein 86 0.02 Archaeplastida
AT5G65790 MYB68, ATMYB68 myb domain protein 68 0.04 Archaeplastida
GSVIVT01015264001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01035332001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Gb_36145 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os01g07450.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os01g52410.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os01g59660.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os01g74410.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os02g42870.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os05g04820.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os07g43420.1 No alias transcription factor (MYB) 0.04 Archaeplastida
LOC_Os11g47460.1 No alias transcription factor (MYB) 0.05 Archaeplastida
MA_1201g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_308669g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_322432g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_355131g0010 No alias transcription factor (MYB) 0.05 Archaeplastida
MA_83918g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_93111g0010 No alias transcription factor (MYB) 0.04 Archaeplastida
Pp3c17_7730V3.1 No alias myb domain protein 55 0.02 Archaeplastida
Smo78303 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
Smo93784 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
Solyc01g087130.4.1 No alias transcription factor (MYB) 0.05 Archaeplastida
Solyc01g102340.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc02g067760.4.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc02g088190.4.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc07g008010.4.1 No alias transcription factor (MYB) 0.05 Archaeplastida
Solyc08g081500.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc12g099140.2.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e015145_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e017428_P003 No alias transcription factor (MYB) 0.06 Archaeplastida
Zm00001e019501_P001 No alias transcription factor (MYB) 0.06 Archaeplastida
Zm00001e019941_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e022280_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e027531_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e030293_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e034118_P001 No alias transcription factor (MYB) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004560 alpha-L-fucosidase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0015928 fucosidase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
CC GO:0030288 outer membrane-bounded periplasmic space IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
CC GO:0042597 periplasmic space IEP Neighborhood
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 69 111
IPR001005 SANT/Myb 14 62
No external refs found!