1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00019p00203560

AMTR_s00019p00203560 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.239

Description : F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana


Gene families : OG0007522 (Archaeplastida) Phylogenetic Tree(s): OG0007522_tree ,
OG_05_0005595 (LandPlants) Phylogenetic Tree(s): OG_05_0005595_tree ,
OG_06_0004617 (SeedPlants) Phylogenetic Tree(s): OG_06_0004617_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00203560
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AT1G30090 No alias Galactose oxidase/kelch repeat superfamily protein 0.04 Archaeplastida
LOC_Os06g44500.1 No alias F-box protein AFR OS=Arabidopsis thaliana... 0.03 Archaeplastida
Smo55890 No alias F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana 0.03 Archaeplastida
Zm00001e037702_P001 No alias F-box protein AFR OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 68 108
IPR006652 Kelch_1 209 254
No external refs found!