Smo7665


Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component


Gene families : OG0002028 (Archaeplastida) Phylogenetic Tree(s): OG0002028_tree ,
OG_05_0008000 (LandPlants) Phylogenetic Tree(s): OG_05_0008000_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo7665
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AT1G78630 emb1473 Ribosomal protein L13 family protein 0.02 Archaeplastida
Cpa|evm.model.tig00020912.24 No alias 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre06.g264350 No alias Protein biosynthesis.organelle translation... 0.05 Archaeplastida
Cre09.g405200 No alias Protein biosynthesis.organelle translation... 0.02 Archaeplastida
GSVIVT01014101001 No alias Protein biosynthesis.organelle translation... 0.04 Archaeplastida
Gb_28095 No alias component psRPL13 of large ribosomal subunit proteome 0.03 Archaeplastida
MA_10433400g0010 No alias component psRPL13 of large ribosomal subunit proteome 0.04 Archaeplastida
Mp3g07030.1 No alias component psRPL13 of large ribosomal subunit proteome 0.07 Archaeplastida
Pp3c1_3220V3.1 No alias Ribosomal protein L13 family protein 0.02 Archaeplastida
Pp3c20_2980V3.1 No alias Ribosomal protein L13 family protein 0.1 Archaeplastida
Solyc07g062190.4.1 No alias component psRPL13 of large ribosomal subunit proteome 0.07 Archaeplastida
Solyc12g014390.3.1 No alias component psRPL13 of large ribosomal subunit proteome 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
CC GO:0009512 cytochrome b6f complex IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
CC GO:0070069 cytochrome complex IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 4 128
No external refs found!