1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00019p00235390

AMTR_s00019p00235390 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.328

Description : RNA biosynthesis.transcriptional activation.SBP transcription factor


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00235390
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00197010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
AMTR_s00106p00142470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.06 Archaeplastida
AMTR_s00106p00142740 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AT1G02065 SPL8 squamosa promoter binding protein-like 8 0.06 Archaeplastida
AT1G27360 SPL11 squamosa promoter-like 11 0.03 Archaeplastida
AT1G27370 SPL10 squamosa promoter binding protein-like 10 0.03 Archaeplastida
AT2G42200 AtSPL9, SPL9 squamosa promoter binding protein-like 9 0.06 Archaeplastida
Cre02.g112750 No alias RNA biosynthesis.transcriptional activation.SBP... 0.01 Archaeplastida
GSVIVT01008556001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
GSVIVT01018204001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
GSVIVT01018205001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.08 Archaeplastida
GSVIVT01033519001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
Gb_15605 No alias transcription factor (SBP) 0.04 Archaeplastida
Gb_22010 No alias transcription factor (SBP) 0.02 Archaeplastida
Gb_27198 No alias transcription factor (SBP) 0.02 Archaeplastida
Gb_38013 No alias transcription factor (SBP) 0.02 Archaeplastida
Gb_38014 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os02g04680.1 No alias transcription factor (SBP) 0.01 Archaeplastida
LOC_Os02g08070.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os04g46580.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os04g56170.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os06g49010.4 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os07g32170.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os08g39890.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os08g41940.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os09g31438.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os09g32944.1 No alias transcription factor (SBP) 0.04 Archaeplastida
MA_10435426g0010 No alias transcription factor (SBP) 0.04 Archaeplastida
MA_3179g0020 No alias transcription factor (SBP) 0.03 Archaeplastida
Mp1g10030.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Pp3c12_24350V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Pp3c16_7490V3.1 No alias squamosa promoter binding protein-like 2 0.03 Archaeplastida
Pp3c25_8630V3.1 No alias squamosa promoter binding protein-like 2 0.04 Archaeplastida
Pp3c6_6900V3.1 No alias squamosa promoter binding protein-like 8 0.03 Archaeplastida
Smo79699 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Solyc05g015840.3.1 No alias transcription factor (SBP) 0.04 Archaeplastida
Solyc07g053810.3.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Solyc07g062980.4.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Solyc10g009080.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc10g018780.3.1 No alias transcription factor (SBP) 0.04 Archaeplastida
Solyc10g078700.3.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Solyc12g038520.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e003546_P002 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e006686_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e010124_P002 No alias transcription factor (SBP) 0.01 Archaeplastida
Zm00001e010443_P001 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e018817_P003 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e025234_P001 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e028442_P002 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e030416_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e034537_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e034628_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e035060_P002 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e037693_P001 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e041526_P001 No alias transcription factor (SBP) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
CC GO:0042555 MCM complex IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
BP GO:0043086 negative regulation of catalytic activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044092 negative regulation of molecular function IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 40 115
No external refs found!