Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.342
Description : Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana
Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0009795 (SeedPlants) Phylogenetic Tree(s): OG_06_0009795_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00019p00238660 | |
Cluster | HCCA: Cluster_248 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00033p00156340 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g80550,... | 0.04 | Archaeplastida | |
AMTR_s00119p00029960 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g15010,... | 0.04 | Archaeplastida | |
AT1G52640 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Archaeplastida | |
AT1G80880 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT5G15010 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Archaeplastida | |
GSVIVT01007280001 | No alias | Pentatricopeptide repeat-containing protein At3g49730... | 0.03 | Archaeplastida | |
GSVIVT01008815001 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | Archaeplastida | |
GSVIVT01010329001 | No alias | Pentatricopeptide repeat-containing protein At3g04130,... | 0.03 | Archaeplastida | |
GSVIVT01015982001 | No alias | Pentatricopeptide repeat-containing protein At1g80880,... | 0.06 | Archaeplastida | |
GSVIVT01017293001 | No alias | Pentatricopeptide repeat-containing protein At1g52640,... | 0.03 | Archaeplastida | |
GSVIVT01027388001 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.03 | Archaeplastida | |
Gb_06907 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.04 | Archaeplastida | |
Gb_08432 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.02 | Archaeplastida | |
Gb_13617 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | Archaeplastida | |
Gb_19758 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
Gb_39082 | No alias | Pentatricopeptide repeat-containing protein At1g71060,... | 0.04 | Archaeplastida | |
Gb_41835 | No alias | Pentatricopeptide repeat-containing protein At2g13420,... | 0.02 | Archaeplastida | |
LOC_Os01g05860.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
LOC_Os03g53490.1 | No alias | Pentatricopeptide repeat-containing protein At3g22670,... | 0.03 | Archaeplastida | |
LOC_Os08g28180.1 | No alias | Pentatricopeptide repeat-containing protein At2g13420,... | 0.03 | Archaeplastida | |
MA_10432868g0030 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | Archaeplastida | |
MA_21580g0010 | No alias | Pentatricopeptide repeat-containing protein At3g49730... | 0.02 | Archaeplastida | |
MA_355286g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.03 | Archaeplastida | |
MA_387336g0010 | No alias | Pentatricopeptide repeat-containing protein At3g22670,... | 0.03 | Archaeplastida | |
MA_455059g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
MA_7909g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.06 | Archaeplastida | |
MA_929381g0010 | No alias | OTP43 mitochondrial RNA splicing factor | 0.02 | Archaeplastida | |
Solyc04g081950.4.1 | No alias | Pentatricopeptide repeat-containing protein At1g20300,... | 0.05 | Archaeplastida | |
Solyc05g008330.3.1 | No alias | Pentatricopeptide repeat-containing protein At1g71060,... | 0.03 | Archaeplastida | |
Zm00001e005655_P001 | No alias | Pentatricopeptide repeat-containing protein At3g22670,... | 0.04 | Archaeplastida | |
Zm00001e015617_P001 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | Archaeplastida | |
Zm00001e036197_P001 | No alias | Pentatricopeptide repeat-containing protein At1g71060,... | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | Neighborhood |
BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
MF | GO:0001871 | pattern binding | IEP | Neighborhood |
MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | Neighborhood |
MF | GO:0004133 | glycogen debranching enzyme activity | IEP | Neighborhood |
MF | GO:0004134 | 4-alpha-glucanotransferase activity | IEP | Neighborhood |
MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
MF | GO:0004618 | phosphoglycerate kinase activity | IEP | Neighborhood |
BP | GO:0005975 | carbohydrate metabolic process | IEP | Neighborhood |
BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | Neighborhood |
BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | Neighborhood |
BP | GO:0006096 | glycolytic process | IEP | Neighborhood |
BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
BP | GO:0006757 | ATP generation from ADP | IEP | Neighborhood |
MF | GO:0008168 | methyltransferase activity | IEP | Neighborhood |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Neighborhood |
MF | GO:0008176 | tRNA (guanine-N7-)-methyltransferase activity | IEP | Neighborhood |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Neighborhood |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Neighborhood |
BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | Neighborhood |
BP | GO:0009166 | nucleotide catabolic process | IEP | Neighborhood |
BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | Neighborhood |
BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | Neighborhood |
BP | GO:0009451 | RNA modification | IEP | Neighborhood |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Neighborhood |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Neighborhood |
MF | GO:0016774 | phosphotransferase activity, carboxyl group as acceptor | IEP | Neighborhood |
MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
MF | GO:0030247 | polysaccharide binding | IEP | Neighborhood |
BP | GO:0042866 | pyruvate biosynthetic process | IEP | Neighborhood |
CC | GO:0044459 | plasma membrane part | IEP | Neighborhood |
BP | GO:0046031 | ADP metabolic process | IEP | Neighborhood |
MF | GO:0051287 | NAD binding | IEP | Neighborhood |
MF | GO:0070403 | NAD+ binding | IEP | Neighborhood |
CC | GO:0098797 | plasma membrane protein complex | IEP | Neighborhood |
BP | GO:1901292 | nucleoside phosphate catabolic process | IEP | Neighborhood |
MF | GO:2001070 | starch binding | IEP | Neighborhood |
No external refs found! |