Smo79699

Description : RNA biosynthesis.transcriptional activation.SBP transcription factor

Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo79699
Cluster	HCCA: Cluster_123

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00058370	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.SBP...	0.02	Archaeplastida
AMTR_s00019p00235390	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.SBP...	0.02	Archaeplastida
AMTR_s00022p00198330	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.SBP...	0.02	Archaeplastida
AT1G27360	SPL11	squamosa promoter-like 11	0.02	Archaeplastida
AT1G27370	SPL10	squamosa promoter binding protein-like 10	0.02	Archaeplastida
Cre02.g112750	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.02	Archaeplastida
Cre10.g433350	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.01	Archaeplastida
GSVIVT01018205001	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.03	Archaeplastida
Gb_22010	No alias	transcription factor (SBP)	0.02	Archaeplastida
LOC_Os02g08070.1	No alias	transcription factor (SBP)	0.02	Archaeplastida
LOC_Os06g44860.1	No alias	transcription factor (SBP)	0.02	Archaeplastida
LOC_Os06g49010.4	No alias	transcription factor (SBP)	0.02	Archaeplastida
LOC_Os07g32170.1	No alias	transcription factor (SBP)	0.03	Archaeplastida
LOC_Os08g39890.1	No alias	transcription factor (SBP)	0.02	Archaeplastida
LOC_Os09g31438.1	No alias	transcription factor (SBP)	0.02	Archaeplastida
LOC_Os09g32944.1	No alias	transcription factor (SBP)	0.02	Archaeplastida
Pp3c16_7490V3.1	No alias	squamosa promoter binding protein-like 2	0.03	Archaeplastida
Pp3c6_6900V3.1	No alias	squamosa promoter binding protein-like 8	0.02	Archaeplastida
Solyc02g077920.4.1	No alias	transcription factor (SBP)	0.02	Archaeplastida
Solyc05g015840.3.1	No alias	transcription factor (SBP)	0.04	Archaeplastida
Solyc07g062980.4.1	No alias	transcription factor (SBP)	0.02	Archaeplastida
Solyc10g009080.4.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e003546_P002	No alias	transcription factor (SBP)	0.02	Archaeplastida
Zm00001e003571_P002	No alias	transcription factor (SBP)	0.02	Archaeplastida
Zm00001e006686_P001	No alias	transcription factor (SBP)	0.03	Archaeplastida
Zm00001e009093_P001	No alias	no hits & (original description: none)	0.01	Archaeplastida
Zm00001e010067_P001	No alias	transcription factor (SBP)	0.01	Archaeplastida
Zm00001e013198_P001	No alias	transcription factor (SBP)	0.02	Archaeplastida
Zm00001e025234_P001	No alias	transcription factor (SBP)	0.03	Archaeplastida
Zm00001e028442_P002	No alias	transcription factor (SBP)	0.02	Archaeplastida
Zm00001e034537_P001	No alias	transcription factor (SBP)	0.03	Archaeplastida
Zm00001e035060_P002	No alias	transcription factor (SBP)	0.02	Archaeplastida
Zm00001e041526_P001	No alias	transcription factor (SBP)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006835	dicarboxylic acid transport	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0015711	organic anion transport	IEP	Neighborhood
BP	GO:0015740	C4-dicarboxylate transport	IEP	Neighborhood
BP	GO:0015743	malate transport	IEP	Neighborhood
BP	GO:0015849	organic acid transport	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0046942	carboxylic acid transport	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	9	82

External Links

No external refs found!

Smo79699

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation