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  5. Smo80491

Smo80491


Description : Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0001265 (Archaeplastida) Phylogenetic Tree(s): OG0001265_tree ,
OG_05_0000728 (LandPlants) Phylogenetic Tree(s): OG_05_0000728_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo80491
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.04 Archaeplastida
AMTR_s00144p00054940 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g40240,... 0.03 Archaeplastida
AT2G40240 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Gb_33603 No alias Pentatricopeptide repeat-containing protein At1g12775,... 0.03 Archaeplastida
LOC_Os07g48850.2 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.02 Archaeplastida
MA_18233g0020 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.02 Archaeplastida
Solyc03g095960.1.1 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 414 439
No external refs found!