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  5. AMTR_s00019p00246710

AMTR_s00019p00246710 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.388

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIh basal transcription factor complex.SSL1-type subunit


Gene families : OG0006238 (Archaeplastida) Phylogenetic Tree(s): OG0006238_tree ,
OG_05_0008234 (LandPlants) Phylogenetic Tree(s): OG_05_0008234_tree ,
OG_06_0009557 (SeedPlants) Phylogenetic Tree(s): OG_06_0009557_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00246710
Cluster HCCA: Cluster_232


Type GO Term Name Evidence Source
BP GO:0006281 DNA repair IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0003995 acyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0003997 acyl-CoA oxidase activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006635 fatty acid beta-oxidation IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009062 fatty acid catabolic process IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
BP GO:0016054 organic acid catabolic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019395 fatty acid oxidation IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0034440 lipid oxidation IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
BP GO:0044242 cellular lipid catabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
BP GO:0046395 carboxylic acid catabolic process IEP Neighborhood
BP GO:0072329 monocarboxylic acid catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004595 TFIIH_C1-like_dom 264 312
IPR007198 Ssl1-like 1 181
No external refs found!