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  5. Smo81909

Smo81909


Description : Cell wall.pectin.modification and degradation.pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo81909
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AT3G53190 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G63180 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
MA_10429028g0020 No alias pectate lyase 0.02 Archaeplastida
MA_52869g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c2_9460V3.1 No alias Pectate lyase family protein 0.02 Archaeplastida
Pp3c3_20320V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
Zm00001e004654_P002 No alias pectate lyase 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016229 steroid dehydrogenase activity IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0034755 iron ion transmembrane transport IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 85 267
No external refs found!