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Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nap57/CBF5 pseudouridine synthase component
Gene families : OG0004601 (Archaeplastida) Phylogenetic Tree(s): OG0004601_tree ,
OG_05_0004875 (LandPlants) Phylogenetic Tree(s): OG_05_0004875_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo81986 | |
| Cluster | HCCA: Cluster_137 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G57150 | CBF5, AtCBF5,... | homologue of NAP57 | 0.03 | Archaeplastida | |
| Cpa|evm.model.tig00000553.10 | No alias | RNA processing.RNA modification.pseudouridylation.H/ACA... | 0.03 | Archaeplastida | |
| Cre03.g172950 | No alias | RNA processing.RNA modification.pseudouridylation.H/ACA... | 0.04 | Archaeplastida | |
| GSVIVT01034188001 | No alias | RNA processing.RNA modification.pseudouridylation.H/ACA... | 0.05 | Archaeplastida | |
| Gb_32372 | No alias | pseudouridine synthase component Nap57/CBF5 of H/ACA... | 0.03 | Archaeplastida | |
| Gb_34541 | No alias | pseudouridine synthase component Nap57/CBF5 of H/ACA... | 0.03 | Archaeplastida | |
| LOC_Os03g25450.1 | No alias | pseudouridine synthase component Nap57/CBF5 of H/ACA... | 0.02 | Archaeplastida | |
| LOC_Os07g44190.1 | No alias | pseudouridine synthase component Nap57/CBF5 of H/ACA... | 0.02 | Archaeplastida | |
| MA_27456g0030 | No alias | pseudouridine synthase component Nap57/CBF5 of H/ACA... | 0.03 | Archaeplastida | |
| Mp4g12650.1 | No alias | pseudouridine synthase component Nap57/CBF5 of H/ACA... | 0.03 | Archaeplastida | |
| Pp3c22_210V3.1 | No alias | homologue of NAP57 | 0.03 | Archaeplastida | |
| Solyc02g081810.4.1 | No alias | pseudouridine synthase component Nap57/CBF5 of H/ACA... | 0.07 | Archaeplastida | |
| Zm00001e025570_P001 | No alias | pseudouridine synthase component Nap57/CBF5 of H/ACA... | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Neighborhood |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0004017 | adenylate kinase activity | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| CC | GO:0005622 | intracellular | IEP | Neighborhood |
| BP | GO:0006413 | translational initiation | IEP | Neighborhood |
| BP | GO:0007034 | vacuolar transport | IEP | Neighborhood |
| BP | GO:0007059 | chromosome segregation | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| MF | GO:0016776 | phosphotransferase activity, phosphate group as acceptor | IEP | Neighborhood |
| MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | Neighborhood |
| MF | GO:0030983 | mismatched DNA binding | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| MF | GO:0050145 | nucleoside monophosphate kinase activity | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002478 | PUA | 304 | 376 |
| No external refs found! |