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  • ECC Pair graph <div class="input-group-btn"><button type="submit" class="btn btn-primary" value="Search" data-toggle="modal" data-target="#loaderModal"><i class="fa fa-search"></i></button></div> </div> </form> </li> <li> <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">Help <span class="caret"></span></a> <ul class="dropdown-menu"> <li><a href="https://github.molgen.mpg.de/proost/CoNekT/blob/master/docs/tutorials/overview.md">Tutorial <span class="text-muted"></span></a></li> <li><a href="/contact">Contact</a></li> </li> </ul> </li> <li class="dropdown"> </li> </ul> </div> </div> </div> <div class="container"> </div> <div class="container"> <div class="top-pad"> <div class="sidebar-sequence" id="sidebar"> <p>Jump to ...</p> <nav id="navbar-side"> <ul class="nav nav-pills nav-stacked" data-spy="affix"> <li><a href="#expression_profile">Profile</a></li> <li><a href="#coexpression_networks">Networks</a></li> <li><a href="#annotation">Annotation</a></li> <li><a href="#links">Links</a></li> </ul> </nav> </div> <ol class="breadcrumb"> <li><a href="/">Home</a></li> <li><a href="/species/">Species</a></li> <li><a href="/species/view/10"><em>Selaginella moellendorffii</em></a></li> <li>Sequence</li> <li class="active"><strong>Smo83613</strong></li> </ol> <h1><strong>Smo83613</strong></h1> <br> <p><span class="text-muted"><em>No description available</em></span></p> <br> <div> <p><strong><abbr title="Click to show help" href="/help/gene_family" data-target="#helpModal">Gene families</abbr> : </strong><a href="/family/view/122513">OG0122512</a> (Archaeplastida) Phylogenetic Tree(s): <span class="text-muted">No tree available for this family</span> ,<br> <a href="/family/view/238117">OG_05_0106490</a> (LandPlants) Phylogenetic Tree(s): <span class="text-muted">No tree available for this family</span> </p> <p><strong>Sequence :</strong> <a href="/sequence/modal/coding/343557" data-target="#profileModal">coding</a> (<a href="/sequence/fasta/coding/343557">download</a>), <a href="/sequence/modal/protein/343557" data-target="#profileModal">protein</a> (<a href="/sequence/fasta/protein/343557">download</a>) </p> </div> <h3 class="banner-blue" id="expression_profile">Expression Profile</h3> <div class="pull-right"> <a href="#" class="btn btn-default" id="enable_pan" data-toggle="tooltip" title="Toggle Pan"><i class="fa fa-arrows" aria-hidden="true"></i></a> <a href="#" class="btn btn-default" id="enable_zoom" data-toggle="tooltip" title="Toggle zoom"><i class="fa fa-search" aria-hidden="true"></i></a> </div> <div style="height:550px; max-height:550px; margin-top:30px"> <canvas id="expression-profile" class="center-block" height="550"/> </div> <br> <div class="pull-right"> <a href="/profile/download/plot/337631" class="btn btn-primary" download="plot_337631.txt">Download</a> </div> <p><strong>Note:</strong>Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available <a href="/profile/view/337631">here</a>.</p> <br> <div> <h3 class="banner-blue" id="coexpression_networks">Co-expression Networks</h3> <div class="table-responsive"> <table class="table table-striped table-separated" id="coexpression_table"> <thead> <tr> <th data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th>Actions</th> </tr> </thead> <tbody> <tr> <td><abbr title="Click to show help" href="/help/neighborhood" data-target="#helpModal">Neighborhood</abbr></td> <td>HRR: <strong>Smo83613</strong></td> <td><a href="/network/download/neighbors/328761" data-toggle="tooltip" data-placement="top" title="Download direct neighbors" download="neighbors_328761.txt"><i class="fa fa-list"></i></span> <a href="/network/graph/328761" data-toggle="tooltip" data-placement="top" title="View neighborhood as graph"><i class="fa fa-sitemap"></i></a> <span class="text-muted" data-toggle="tooltip" data-placement="top" title="Disabled for neighborhoods"><i class="fa fa-area-chart"></i></span> <span class="text-muted" data-toggle="tooltip" data-placement="top" title="Disabled for neighborhoods"><i class="fa fa-table"></i></span></td> </tr> <tr> <td><abbr title="Click to show help" href="/help/cluster" data-target="#helpModal">Cluster</abbr></td> <td>HCCA: <strong><a href="/cluster/view/6330" class="qtip_tooltip" qtip_href="/cluster/tooltip/6330">Cluster_1</a></strong></td> <td><a href="/cluster/view/6330" data-toggle="tooltip" data-placement="top" title="View cluster as table"><i class="fa fa-list"></i></a> <a href="/cluster/graph/6330" data-toggle="tooltip" data-placement="top" title="View cluster as graph"><i class="fa fa-sitemap"></i></a> <a href="/profile_comparison/cluster/6330" data-toggle="tooltip" data-placement="top" title="Compare profiles in this cluster"><i class="fa fa-area-chart"></i></a> <a href="/heatmap/cluster/6330" data-toggle="tooltip" data-placement="top" title="Heatmap of profiles in this cluster"><i class="fa fa-table"></i></a></td> </tr> </tbody> </table> </div> </div> <br> <br> <h3 class="banner-blue" id="annotation">Functional Annotation</h3> <div class="panel with-nav-tabs panel-default"> <div class="panel-heading"> <ul class="nav nav-tabs"> <li class="active"><a href="#tab1default" data-toggle="tab">GO</a></li> <li><a href="#tab2default" data-toggle="tab">Predicted GO</a></li> <li><a href="#tab3default" data-toggle="tab">InterPro</a></li> </ul> </div> <div> <div class="tab-content"> <div class="tab-pane fade in active" id="tab1default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr> <td class="col-xs-12"><p>No GO annotation available for this sequence</p></td> </tr> </tbody> </table> </div> <div class="panel-body"> <a href="#" id="go_toggle">Toggle parental</a> </div> </div> <div class="tab-pane fade" id="tab2default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="predicted_go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/35" data-toggle="tooltip" data-placement="top" title=""The directed movement of transition metal ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver." [ISBN:0198506732]">GO:0000041</a></td> <td class="col-xs-6">transition metal ion transport</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/4074" data-toggle="tooltip" data-placement="top" title=""Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells." [GOC:ai, GOC:dgf]">GO:0005215</a></td> <td class="col-xs-6">transporter activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5420" data-toggle="tooltip" data-placement="top" title=""The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein." [GOC:dos, GOC:dph, GOC:jl, GOC:mah]">GO:0006810</a></td> <td class="col-xs-6">transport</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5421" data-toggle="tooltip" data-placement="top" title=""The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai]">GO:0006811</a></td> <td class="col-xs-6">ion transport</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5422" data-toggle="tooltip" data-placement="top" title=""The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai]">GO:0006812</a></td> <td class="col-xs-6">cation transport</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5432" data-toggle="tooltip" data-placement="top" title=""The directed movement of copper (Cu) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai]">GO:0006825</a></td> <td class="col-xs-6">copper ion transport</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/6608" data-toggle="tooltip" data-placement="top" title=""Enables the transfer of a negatively charged ion from one side of a membrane to the other." [GOC:dgf, GOC:mtg_transport, ISBN:0815340729]">GO:0008509</a></td> <td class="col-xs-6">anion transmembrane transporter activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/9262" data-toggle="tooltip" data-placement="top" title=""Enables the transfer of an ion from one side of a membrane to the other." [GOC:dgf, GOC:mtg_transport, ISBN:0815340729]">GO:0015075</a></td> <td class="col-xs-6">ion transmembrane transporter activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/9286" data-toggle="tooltip" data-placement="top" title=""Enables the transfer of inorganic anions from one side of a membrane to the other. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage." [GOC:ai]">GO:0015103</a></td> <td class="col-xs-6">inorganic anion transmembrane transporter activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/9299" data-toggle="tooltip" data-placement="top" title=""Enables the transfer of sulfate ions, SO4(2-), from one side of a membrane to the other." [GOC:ai]">GO:0015116</a></td> <td class="col-xs-6">sulfate transmembrane transporter activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/9471" data-toggle="tooltip" data-placement="top" title=""Enables the transfer of an inorganic molecular entity from the outside of a cell to the inside of the cell across a membrane. An inorganic molecular entity is a molecular entity that contains no carbon." [GOC:mtg_transport, ISBN:0815340729]">GO:0015318</a></td> <td class="col-xs-6">inorganic molecular entity transmembrane transporter activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/13539" data-toggle="tooltip" data-placement="top" title=""Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other." [GOC:jid, GOC:mtg_transport, ISBN:0815340729]">GO:0022857</a></td> <td class="col-xs-6">transmembrane transporter activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/13632" data-toggle="tooltip" data-placement="top" title=""The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai]">GO:0030001</a></td> <td class="col-xs-6">metal ion transport</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/17645" data-toggle="tooltip" data-placement="top" title=""A process in which an ion is transported across a membrane." [GOC:mah]">GO:0034220</a></td> <td class="col-xs-6">ion transmembrane transport</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/18818" data-toggle="tooltip" data-placement="top" title=""The directed movement of copper cation across a membrane." [GOC:vw]">GO:0035434</a></td> <td class="col-xs-6">copper ion transmembrane transport</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/27906" data-toggle="tooltip" data-placement="top" title=""Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation." [GOC:ai, GOC:dos]">GO:0051179</a></td> <td class="col-xs-6">localization</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/27957" data-toggle="tooltip" data-placement="top" title=""Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation." [GOC:ai, GOC:dos]">GO:0051234</a></td> <td class="col-xs-6">establishment of localization</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/29682" data-toggle="tooltip" data-placement="top" title=""The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other." [GOC:dph, GOC:jid]">GO:0055085</a></td> <td class="col-xs-6">transmembrane transport</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/36782" data-toggle="tooltip" data-placement="top" title=""The process in which a cation is transported across a membrane." [GOC:dos, GOC:vw]">GO:0098655</a></td> <td class="col-xs-6">cation transmembrane transport</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/36787" data-toggle="tooltip" data-placement="top" title=""The process in which an inorganic ion is transported across a membrane." [GOC:mah]">GO:0098660</a></td> <td class="col-xs-6">inorganic ion transmembrane transport</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/36789" data-toggle="tooltip" data-placement="top" title=""A process in which an inorganic cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore." [GOC:mah]">GO:0098662</a></td> <td class="col-xs-6">inorganic cation transmembrane transport</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/40892" data-toggle="tooltip" data-placement="top" title=""Enables the transfer of a sulfur compound from one side of a membrane to the other." [GOC:pr, GOC:TermGenie]">GO:1901682</a></td> <td class="col-xs-6">sulfur compound transmembrane transporter activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="interpro_table"> <thead> <tr> <th class="col-xs-3" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/interpro_domain" data-target="#helpModal">InterPro domains</abbr></th> <th class="col-xs-5" data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Start</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Stop</th> </tr> </thead> <tbody> <tr> <td class="col-xs-3"><a href="/interpro/view/4320">IPR005134</a></td> <td class="col-xs-5">UPF0114</td> <td class="col-xs-2">6</td> <td class="col-xs-2">147</td> </tr> </tbody> </table> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12 col-md-12 col-sm-12"> <div class="panel panel-default"> <div class="panel-heading" id="links">External Links</div> <div class="table-responsive"> <table class="table table-striped table-separated"> <tbody> <tr> <td><em>No external refs found!</em></td> </td> </tr> </tbody> </table> </div> </div> </div> </div> <div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script> function init_qtip() { $('.qtip_tooltip').each(function() { $(this).qtip({ content: { text: function(event, api) { $.ajax({ url: api.elements.target.attr('qtip_href') }) .then(function(content) { // Set the tooltip content upon successful retrieval api.set('content.text', content); 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