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Description : RNA biosynthesis.transcriptional activation.TUB transcription factor
Gene families : OG0000335 (Archaeplastida) Phylogenetic Tree(s): OG0000335_tree ,
OG_05_0000295 (LandPlants) Phylogenetic Tree(s): OG_05_0000295_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo83983 | |
| Cluster | HCCA: Cluster_143 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G43640 | AtTLP5, TLP5 | tubby like protein 5 | 0.02 | Archaeplastida | |
| AT3G06380 | TLP9, ATTLP9 | tubby-like protein 9 | 0.02 | Archaeplastida | |
| GSVIVT01034528001 | No alias | RNA biosynthesis.transcriptional activation.TUB... | 0.02 | Archaeplastida | |
| Gb_22686 | No alias | transcription factor (TUB) | 0.03 | Archaeplastida | |
| LOC_Os01g64700.2 | No alias | transcription factor (TUB) | 0.02 | Archaeplastida | |
| LOC_Os08g01290.5 | No alias | transcription factor (TUB) | 0.03 | Archaeplastida | |
| Solyc04g071750.4.1 | No alias | transcription factor (TUB) | 0.03 | Archaeplastida | |
| Solyc10g046970.2.1 | No alias | transcription factor (TUB) | 0.04 | Archaeplastida | |
| Zm00001e023326_P001 | No alias | transcription factor (TUB) | 0.03 | Archaeplastida | |
| Zm00001e024284_P002 | No alias | transcription factor (TUB) | 0.02 | Archaeplastida | |
| Zm00001e032131_P001 | No alias | transcription factor (TUB) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003824 | catalytic activity | IEP | Neighborhood |
| MF | GO:0005216 | ion channel activity | IEP | Neighborhood |
| CC | GO:0005783 | endoplasmic reticulum | IEP | Neighborhood |
| BP | GO:0006464 | cellular protein modification process | IEP | Neighborhood |
| BP | GO:0006468 | protein phosphorylation | IEP | Neighborhood |
| BP | GO:0006793 | phosphorus metabolic process | IEP | Neighborhood |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0006810 | transport | IEP | Neighborhood |
| BP | GO:0006887 | exocytosis | IEP | Neighborhood |
| BP | GO:0008150 | biological_process | IEP | Neighborhood |
| BP | GO:0008152 | metabolic process | IEP | Neighborhood |
| MF | GO:0008716 | D-alanine-D-alanine ligase activity | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| MF | GO:0015267 | channel activity | IEP | Neighborhood |
| BP | GO:0016310 | phosphorylation | IEP | Neighborhood |
| BP | GO:0016567 | protein ubiquitination | IEP | Neighborhood |
| MF | GO:0016740 | transferase activity | IEP | Neighborhood |
| MF | GO:0016757 | transferase activity, transferring glycosyl groups | IEP | Neighborhood |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Neighborhood |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Neighborhood |
| MF | GO:0016881 | acid-amino acid ligase activity | IEP | Neighborhood |
| BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0022838 | substrate-specific channel activity | IEP | Neighborhood |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | Neighborhood |
| BP | GO:0032940 | secretion by cell | IEP | Neighborhood |
| BP | GO:0036211 | protein modification process | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0043412 | macromolecule modification | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
| BP | GO:0046903 | secretion | IEP | Neighborhood |
| BP | GO:0051179 | localization | IEP | Neighborhood |
| BP | GO:0051234 | establishment of localization | IEP | Neighborhood |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Neighborhood |
| BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000007 | Tubby_C | 133 | 425 |
| No external refs found! |