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  5. Smo84657

Smo84657


Description : Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0016527 (LandPlants) Phylogenetic Tree(s): OG_05_0016527_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo84657
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
AMTR_s00066p00062930 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g49170,... 0.02 Archaeplastida
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
AMTR_s02193p00008230 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.02 Archaeplastida
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G02330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.05 Archaeplastida
GSVIVT01009227001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.04 Archaeplastida
GSVIVT01011479001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.04 Archaeplastida
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01020091001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Archaeplastida
GSVIVT01023971001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01033190001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 Archaeplastida
Gb_36806 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
LOC_Os02g50280.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os03g59264.1 No alias lectin chaperone (CRT) 0.04 Archaeplastida
LOC_Os04g39410.1 No alias RNA editing factor (OTP86) 0.03 Archaeplastida
LOC_Os05g12130.1 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
LOC_Os10g33730.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
LOC_Os11g29230.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_123466g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Smo110409 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
Solyc04g076800.3.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Zm00001e002552_P001 No alias RNA editing factor (SEL1/PDM1) 0.03 Archaeplastida
Zm00001e015440_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Zm00001e021453_P001 No alias Pentatricopeptide repeat-containing protein At5g06540... 0.02 Archaeplastida
Zm00001e021457_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Zm00001e023498_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e029186_P001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 Archaeplastida
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 165 187
No external refs found!