1. Home
  2. Species
  3. Selaginella moellendorffii
  4. Sequence
  5. Smo85078

Smo85078


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0016527 (LandPlants) Phylogenetic Tree(s): OG_05_0016527_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo85078
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.04 Archaeplastida
GSVIVT01009227001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
GSVIVT01011479001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Archaeplastida
LOC_Os02g50280.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
LOC_Os04g51350.1 No alias RNA editing factor (AEF1) 0.05 Archaeplastida
LOC_Os05g12130.1 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
LOC_Os05g50950.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.04 Archaeplastida
LOC_Os07g02280.1 No alias RNA editing factor (OTP80) 0.05 Archaeplastida
Solyc04g076800.3.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Zm00001e012691_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Zm00001e021457_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Zm00001e023498_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP Neighborhood
MF GO:0008837 diaminopimelate epimerase activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016854 racemase and epimerase activity IEP Neighborhood
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Neighborhood
MF GO:0047661 amino-acid racemase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 167 258
No external refs found!