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Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor
Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo85851 | |
| Cluster | HCCA: Cluster_33 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00017p00244900 | evm_27.TU.AmTr_v1... | Floral homeotic protein PMADS 2 OS=Petunia hybrida | 0.02 | Archaeplastida | |
| AT1G77950 | AGL67 | AGAMOUS-like 67 | 0.02 | Archaeplastida | |
| LOC_Os08g41960.1 | No alias | transcription factor (MADS/AGL) | 0.01 | Archaeplastida | |
| MA_10432602g0010 | No alias | no hits & (original description: none) | 0.01 | Archaeplastida | |
| MA_9972589g0010 | No alias | no hits & (original description: none) | 0.01 | Archaeplastida | |
| Pp3c16_19170V3.1 | No alias | AGAMOUS-like 61 | 0.02 | Archaeplastida | |
| Pp3c25_6940V3.1 | No alias | AGAMOUS-like 62 | 0.02 | Archaeplastida | |
| Smo69980 | No alias | RNA biosynthesis.transcriptional activation.MADS box... | 0.05 | Archaeplastida | |
| Smo93174 | No alias | RNA biosynthesis.transcriptional activation.MADS box... | 0.04 | Archaeplastida | |
| Solyc01g106720.1.1 | No alias | transcription factor (MADS/AGL) | 0.01 | Archaeplastida | |
| Solyc05g015750.3.1 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Solyc10g080030.2.1 | No alias | transcription factor (MADS/AGL) | 0.03 | Archaeplastida | |
| Zm00001e003667_P001 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Zm00001e006950_P001 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Zm00001e010125_P001 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Zm00001e012026_P002 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Zm00001e016529_P004 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Zm00001e026007_P004 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| Zm00001e030373_P001 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Zm00001e031267_P003 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida | |
| Zm00001e039774_P001 | No alias | transcription factor (MADS/AGL) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000041 | transition metal ion transport | IEP | Neighborhood |
| MF | GO:0005199 | structural constituent of cell wall | IEP | Neighborhood |
| CC | GO:0005811 | lipid droplet | IEP | Neighborhood |
| BP | GO:0006825 | copper ion transport | IEP | Neighborhood |
| CC | GO:0012511 | monolayer-surrounded lipid storage body | IEP | Neighborhood |
| BP | GO:0035434 | copper ion transmembrane transport | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| MF | GO:0045735 | nutrient reservoir activity | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002100 | TF_MADSbox | 14 | 46 |
| No external refs found! |