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  5. AMTR_s00019p00256940

AMTR_s00019p00256940 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.458

Description : Cell cycle.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.RPA2 component


Gene families : OG0002769 (Archaeplastida) Phylogenetic Tree(s): OG0002769_tree ,
OG_05_0003219 (LandPlants) Phylogenetic Tree(s): OG_05_0003219_tree ,
OG_06_0002907 (SeedPlants) Phylogenetic Tree(s): OG_06_0002907_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00256940
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020684.26 No alias Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.03 Archaeplastida
Cre02.g100000 No alias Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.02 Archaeplastida
GSVIVT01035537001 No alias Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.06 Archaeplastida
Gb_15876 No alias component RPA2 of single-stranded-DNA binding RPA... 0.05 Archaeplastida
MA_10607g0010 No alias component RPA2 of single-stranded-DNA binding RPA... 0.03 Archaeplastida
Mp5g22240.1 No alias component RPA2 of single-stranded-DNA binding RPA... 0.07 Archaeplastida
Solyc07g018300.3.1 No alias component RPA2 of single-stranded-DNA binding RPA... 0.04 Archaeplastida
Zm00001e016275_P001 No alias component RPA2 of single-stranded-DNA binding RPA... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009141 nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009200 deoxyribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009211 pyrimidine deoxyribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009219 pyrimidine deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009262 deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0019692 deoxyribose phosphate metabolic process IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030337 DNA polymerase processivity factor activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
CC GO:0043626 PCNA complex IEP Neighborhood
CC GO:0044796 DNA polymerase processivity factor complex IEP Neighborhood
BP GO:0046080 dUTP metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR014892 RPA_C 186 291
No external refs found!