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  5. Smo87961

Smo87961


Description : Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0106585 (LandPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo87961
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00262470 No alias Pentatricopeptide repeat-containing protein At2g02980,... 0.03 Archaeplastida
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00012p00252800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.03 Archaeplastida
AMTR_s00024p00225420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
AMTR_s00029p00235510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
AMTR_s00039p00132380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
AMTR_s00147p00097570 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida
GSVIVT01010898001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.03 Archaeplastida
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_16062 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_18015 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
Gb_34736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
LOC_Os10g34720.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os11g29230.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_10164206g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_18165g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
MA_31170g0010 No alias RNA editing factor (MEF19) 0.02 Archaeplastida
MA_34492g0020 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_4438g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_525914g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_94165g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Smo102968 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Smo121365 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.04 Archaeplastida
Smo133872 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.04 Archaeplastida
Smo80412 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo82072 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
Solyc01g007850.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Solyc01g098150.3.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.05 Archaeplastida
Solyc05g013200.1.1 No alias RNA editing factor (OTP85) 0.02 Archaeplastida
Solyc06g066080.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
Zm00001e001007_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e001038_P001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 Archaeplastida
Zm00001e007042_P001 No alias RNA editing factor (AEF1) 0.03 Archaeplastida
Zm00001e019482_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 Archaeplastida
Zm00001e029186_P001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 Archaeplastida
Zm00001e031660_P001 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.02 Archaeplastida
Zm00001e040418_P001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.02 Archaeplastida
Zm00001e040920_P001 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 82 112
No external refs found!