AMTR_s00019p00257260 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.461

Description : Vesicle trafficking.autophagosome formation.ATG9-2-18 membrane shuttling complex.ATG18 component


Gene families : OG0002452 (Archaeplastida) Phylogenetic Tree(s): OG0002452_tree ,
OG_05_0001770 (LandPlants) Phylogenetic Tree(s): OG_05_0001770_tree ,
OG_06_0001756 (SeedPlants) Phylogenetic Tree(s): OG_06_0001756_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00257260
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
AT1G03380 ATATG18G, ATG18G homolog of yeast autophagy 18 (ATG18) G 0.03 Archaeplastida
GSVIVT01014602001 No alias Vesicle trafficking.autophagosome formation.ATG9-2-18... 0.03 Archaeplastida
Gb_30797 No alias component ATG18 of autophagosome ATG9-2-18 membrane... 0.03 Archaeplastida
LOC_Os01g57720.1 No alias component ATG18 of autophagosome ATG9-2-18 membrane... 0.03 Archaeplastida
Pp3c23_8190V3.1 No alias homolog of yeast autophagy 18 (ATG18) H 0.04 Archaeplastida
Pp3c24_5800V3.1 No alias homolog of yeast autophagy 18 (ATG18) H 0.03 Archaeplastida
Pp3c8_5760V3.1 No alias homolog of yeast autophagy 18 (ATG18) H 0.02 Archaeplastida
Zm00001e027088_P001 No alias component ATG18 of autophagosome ATG9-2-18 membrane... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 371 397
IPR022175 BCAS3 514 761
No external refs found!