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  4. Sequence
  5. Smo89227

Smo89227


Description : RNA biosynthesis.transcriptional activation.TCP transcription factor


Gene families : OG0000332 (Archaeplastida) Phylogenetic Tree(s): OG0000332_tree ,
OG_05_0000167 (LandPlants) Phylogenetic Tree(s): OG_05_0000167_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo89227
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00154p00072430 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TCP... 0.03 Archaeplastida
AT1G53230 TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 0.03 Archaeplastida
AT3G02150 TCP13, TFPD, PTF1 plastid transcription factor 1 0.03 Archaeplastida
GSVIVT01008234001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.04 Archaeplastida
GSVIVT01011962001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.04 Archaeplastida
GSVIVT01014236001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.03 Archaeplastida
Gb_30049 No alias transcription factor (TCP) 0.05 Archaeplastida
LOC_Os03g57190.1 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_37369g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_52440g0010 No alias transcription factor (TCP) 0.04 Archaeplastida
MA_75780g0010 No alias transcription factor (TCP) 0.04 Archaeplastida
Solyc02g065800.3.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc03g115010.3.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc04g006980.1.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc05g009900.3.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc05g012840.1.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc06g069460.3.1 No alias transcription factor (TCP) 0.06 Archaeplastida
Solyc08g048370.4.1 No alias transcription factor (TCP) 0.04 Archaeplastida
Zm00001e005407_P001 No alias transcription factor (TCP) 0.02 Archaeplastida
Zm00001e011911_P001 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e012216_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e019734_P001 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e032821_P001 No alias transcription factor (TCP) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 12 73
No external refs found!