Smo89924

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor

Gene families : OG0000060 (Archaeplastida) Phylogenetic Tree(s): OG0000060_tree ,
OG_05_0000025 (LandPlants) Phylogenetic Tree(s): OG_05_0000025_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo89924
Cluster	HCCA: Cluster_123

Target	Alias	Description	ECC score	Gene Family Method
AT1G26790	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Archaeplastida
AT2G46590	DAG2	Dof-type zinc finger DNA-binding family protein	0.05	Archaeplastida
AT5G02460	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT5G60850	OBP4	OBF binding protein 4	0.01	Archaeplastida
AT5G62940	HCA2, DOF5.6	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT5G66940	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Archaeplastida
GSVIVT01002242001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
LOC_Os01g09720.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os01g15900.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os02g15350.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os03g16850.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os04g47990.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os07g13260.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os08g38220.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Pp3c13_21190V3.1	No alias	cycling DOF factor 3	0.02	Archaeplastida
Pp3c16_6460V3.1	No alias	cycling DOF factor 2	0.02	Archaeplastida
Pp3c17_7930V3.1	No alias	cycling DOF factor 2	0.02	Archaeplastida
Pp3c9_4910V3.1	No alias	cycling DOF factor 2	0.02	Archaeplastida
Solyc02g065290.1.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc02g077960.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc02g088070.3.1	No alias	transcription factor (DOF)	0.01	Archaeplastida
Solyc02g090220.3.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc03g112930.3.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc04g079570.1.1	No alias	transcription factor (DOF)	0.01	Archaeplastida
Solyc05g007880.4.1	No alias	Cyclic dof factor 2 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Zm00001e001988_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e002951_P002	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e003086_P001	No alias	transcription factor (DOF)	0.01	Archaeplastida
Zm00001e004476_P002	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e005107_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e005785_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e012437_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e015414_P004	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e023218_P004	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e028672_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006835	dicarboxylic acid transport	IEP	Neighborhood
BP	GO:0015711	organic anion transport	IEP	Neighborhood
BP	GO:0015740	C4-dicarboxylate transport	IEP	Neighborhood
BP	GO:0015743	malate transport	IEP	Neighborhood
BP	GO:0015849	organic acid transport	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
BP	GO:0046942	carboxylic acid transport	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	1	52

External Links

No external refs found!

Smo89924

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation