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  5. Smo91379

Smo91379


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SPF30 pre-mRNA splicing factor


Gene families : OG0006022 (Archaeplastida) Phylogenetic Tree(s): OG0006022_tree ,
OG_05_0006558 (LandPlants) Phylogenetic Tree(s): OG_05_0006558_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo91379
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cre02.g106550 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
LOC_Os08g01840.1 No alias pre-mRNA splicing factor (SPF30) 0.02 Archaeplastida
Pp3c10_3582V3.1 No alias nucleic acid binding;RNA binding 0.02 Archaeplastida
Zm00001e021874_P004 No alias pre-mRNA splicing factor (SPF30) 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR010304 Survival_motor_neuron 3 67
No external refs found!