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  5. AMTR_s00020p00161780

AMTR_s00020p00161780 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00020.57

No description available


Gene families : OG0000196 (Archaeplastida) Phylogenetic Tree(s): OG0000196_tree ,
OG_05_0000095 (LandPlants) Phylogenetic Tree(s): OG_05_0000095_tree ,
OG_06_0000549 (SeedPlants) Phylogenetic Tree(s): OG_06_0000549_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00020p00161780
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g54340.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os03g58230.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os07g08390.2 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os11g25020.1 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10117499g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c11_3150V3.1 No alias Protein of unknown function (DUF506) 0.02 Archaeplastida
Solyc06g005480.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e018858_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e019800_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e032942_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0007264 small GTPase mediated signal transduction IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR006502 PDDEXK-like 87 243
No external refs found!