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  5. Smo97343

Smo97343


Description : Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000075 (LandPlants) Phylogenetic Tree(s): OG_05_0000075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo97343
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00024p00225420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
AMTR_s00147p00097570 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.02 Archaeplastida
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
Gb_21745 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
Gb_25129 No alias RNA editing factor (ECD1) 0.02 Archaeplastida
Gb_26526 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 Archaeplastida
Gb_36806 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
LOC_Os01g68490.1 No alias Putative pentatricopeptide repeat-containing protein... 0.01 Archaeplastida
LOC_Os10g33730.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.01 Archaeplastida
MA_11074g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_20168g0010 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.01 Archaeplastida
Pp3c22_1710V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Smo110016 No alias Pentatricopeptide repeat-containing protein At1g06140,... 0.02 Archaeplastida
Smo118817 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.02 Archaeplastida
Smo120613 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.02 Archaeplastida
Smo121365 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.03 Archaeplastida
Smo80412 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo82072 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Zm00001e015440_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.01 Archaeplastida
Zm00001e029186_P001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 78 107
No external refs found!