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  5. Smo98006

Smo98006


Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL3-BTB E3 ligase complexes.CUL3 scaffold component


Gene families : OG0001033 (Archaeplastida) Phylogenetic Tree(s): OG0001033_tree ,
OG_05_0002897 (LandPlants) Phylogenetic Tree(s): OG_05_0002897_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo98006
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00163840 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT1G26830 ATCUL3A, ATCUL3,... cullin 3 0.02 Archaeplastida
AT1G69670 CUL3B, ATCUL3B cullin 3B 0.03 Archaeplastida
AT5G46210 ATCUL4, CUL4 cullin4 0.05 Archaeplastida
Cpa|evm.model.tig00000157.110 No alias Cullin-4 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre07.g324050 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Cre12.g516500 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01020008001 No alias Cullin-3A OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_08576 No alias scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.02 Archaeplastida
Gb_08728 No alias scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.06 Archaeplastida
Gb_27360 No alias scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.02 Archaeplastida
LOC_Os02g51180.1 No alias scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.02 Archaeplastida
LOC_Os08g07400.1 No alias scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.02 Archaeplastida
MA_36374g0010 No alias Cullin-4 OS=Arabidopsis thaliana (sp|q8lgh4|cul4_arath : 352.0) 0.04 Archaeplastida
Mp4g12190.1 No alias scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.02 Archaeplastida
Pp3c11_21000V3.1 No alias cullin 3 0.03 Archaeplastida
Pp3c12_14490V3.1 No alias cullin4 0.04 Archaeplastida
Pp3c3_20200V3.1 No alias cullin4 0.02 Archaeplastida
Pp3c7_5730V3.1 No alias cullin 3 0.05 Archaeplastida
Solyc01g010820.3.1 No alias scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.04 Archaeplastida
Solyc02g021470.4.1 No alias scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.03 Archaeplastida
Zm00001e005919_P001 No alias scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.03 Archaeplastida
Zm00001e015820_P001 No alias scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.03 Archaeplastida
Zm00001e040141_P001 No alias scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001373 Cullin_N 29 633
No external refs found!