AMTR_s00021p00057700 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.27

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor


Gene families : OG0000060 (Archaeplastida) Phylogenetic Tree(s): OG0000060_tree ,
OG_05_0000025 (LandPlants) Phylogenetic Tree(s): OG_05_0000025_tree ,
OG_06_0000055 (SeedPlants) Phylogenetic Tree(s): OG_06_0000055_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00057700
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AT5G60200 TMO6 TARGET OF MONOPTEROS 6 0.02 Archaeplastida
GSVIVT01002242001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
GSVIVT01034189001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
LOC_Os01g17000.1 No alias transcription factor (DOF) 0.02 Archaeplastida
Pp3c14_24190V3.1 No alias cycling DOF factor 3 0.02 Archaeplastida
Pp3c9_4910V3.1 No alias cycling DOF factor 2 0.02 Archaeplastida
Solyc03g112930.3.1 No alias transcription factor (DOF) 0.03 Archaeplastida
Solyc08g082910.2.1 No alias transcription factor (DOF) 0.02 Archaeplastida
Zm00001e004476_P002 No alias transcription factor (DOF) 0.03 Archaeplastida
Zm00001e019172_P001 No alias transcription factor (DOF) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
MF GO:0016860 intramolecular oxidoreductase activity IEP Neighborhood
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003851 Znf_Dof 41 99
No external refs found!