Solyc00g500077.1.1

Description : 50S ribosomal protein L16, chloroplastic OS=Atropa belladonna (sp|q8s8v6|rk16_atrbe : 206.0)

Gene families : OG0002172 (Archaeplastida) Phylogenetic Tree(s): OG0002172_tree ,
OG_05_0002418 (LandPlants) Phylogenetic Tree(s): OG_05_0002418_tree ,
OG_06_0003781 (SeedPlants) Phylogenetic Tree(s): OG_06_0003781_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc00g500077.1.1
Cluster	HCCA: Cluster_191

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s02809p00000680	evm_27.TU.AmTr_v1...	50S ribosomal protein L16, chloroplastic OS=Amborella trichopoda	0.05	Archaeplastida
ATCG00790	RPL16	ribosomal protein L16	0.07	Archaeplastida
Cre06.g278224	No alias	60S ribosomal protein L16, mitochondrial OS=Prototheca...	0.03	Archaeplastida
Gb_40955	No alias	50S ribosomal protein L16, chloroplastic...	0.04	Archaeplastida
LOC_Os01g57958.1	No alias	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.17	Archaeplastida
LOC_Os04g16826.1	No alias	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.16	Archaeplastida
LOC_Os05g22724.1	No alias	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.1	Archaeplastida
LOC_Os10g21344.1	No alias	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.16	Archaeplastida
Mp1g22400.1	No alias	60S ribosomal protein L16, mitochondrial OS=Marchantia...	0.11	Archaeplastida
Mp6g01250.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Pp3c2_23477V3.1	No alias	ribosomal protein L16	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Neighborhood
CC	GO:0009507	chloroplast	IEP	Neighborhood
CC	GO:0009536	plastid	IEP	Neighborhood
BP	GO:0009767	photosynthetic electron transport chain	IEP	Neighborhood
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	Neighborhood
BP	GO:0019684	photosynthesis, light reaction	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022900	electron transport chain	IEP	Neighborhood
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR016180	Ribosomal_L10e/L16	2	116

External Links

No external refs found!

Solyc00g500077.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation