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  5. Solyc00g500139.1.1

Solyc00g500139.1.1


Description : apoprotein PsaA of PS-I complex


Gene families : OG0000489 (Archaeplastida) Phylogenetic Tree(s): OG0000489_tree ,
OG_05_0000306 (LandPlants) Phylogenetic Tree(s): OG_05_0000306_tree ,
OG_06_0000861 (SeedPlants) Phylogenetic Tree(s): OG_06_0000861_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500139.1.1
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g57962.1 No alias apoprotein PsaB of PS-I complex 0.02 Archaeplastida
Solyc01g017230.2.1 No alias NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic... 0.03 Archaeplastida
Solyc12g032960.1.1 No alias Photosystem I P700 chlorophyll a apoprotein A1 OS=Atropa... 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0009579 thylakoid IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
InterPro domains Description Start Stop
IPR001280 PSI_PsaA/B 84 560
IPR001280 PSI_PsaA/B 1 88
No external refs found!