Solyc00g500245.1.1

Description : component mtRPL16 of large ribosomal subunit proteome. component mtRPS3 of small ribosomal subunit proteome. component mtRPS19 of small ribosomal subunit proteome

Gene families : OG0005073 (Archaeplastida) Phylogenetic Tree(s): OG0005073_tree ,
OG_05_0002674 (LandPlants) Phylogenetic Tree(s): OG_05_0002674_tree ,
OG_06_0001420 (SeedPlants) Phylogenetic Tree(s): OG_06_0001420_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc00g500245.1.1
Cluster	HCCA: Cluster_1

Target	Alias	Description	ECC score	Gene Family Method
ATMG00090	No alias	structural constituent of ribosome;protein binding	0.05	Archaeplastida
Gb_13807	No alias	Ribosomal protein S3, mitochondrial OS=Zea mays...	0.07	Archaeplastida
LOC_Os12g34054.1	No alias	component mtRPS3 of small ribosomal subunit proteome	0.04	Archaeplastida
LOC_Os12g34124.1	No alias	component mtRPS3 of small ribosomal subunit proteome	0.04	Archaeplastida
Solyc05g045824.1.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc05g045826.1.1	No alias	Ribosomal protein S3, mitochondrial OS=Petunia hybrida...	0.02	Archaeplastida
Zm00001e037170_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e037207_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e037209_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e037214_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Neighborhood
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Neighborhood
CC	GO:0009507	chloroplast	IEP	Neighborhood
CC	GO:0009536	plastid	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0017004	cytochrome complex assembly	IEP	Neighborhood
BP	GO:0022607	cellular component assembly	IEP	Neighborhood
BP	GO:0022900	electron transport chain	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043933	protein-containing complex subunit organization	IEP	Neighborhood
BP	GO:0065003	protein-containing complex assembly	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002222	Ribosomal_S19	4	79
IPR001351	Ribosomal_S3_C	475	546
IPR016180	Ribosomal_L10e/L16	547	672

External Links

No external refs found!

Solyc00g500245.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation