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  5. Solyc00g500275.1.1

Solyc00g500275.1.1


Description : Cytochrome c oxidase subunit 2 OS=Beta vulgaris (sp|p98012|cox2_betvu : 217.0)


Gene families : OG0003080 (Archaeplastida) Phylogenetic Tree(s): OG0003080_tree ,
OG_05_0002809 (LandPlants) Phylogenetic Tree(s): OG_05_0002809_tree ,
OG_06_0002722 (SeedPlants) Phylogenetic Tree(s): OG_06_0002722_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500275.1.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s04574p00000060 evm_27.TU.AmTr_v1... Cytochrome c oxidase subunit 2 OS=Triticum aestivum 0.04 Archaeplastida
AMTR_s04574p00001800 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s05659p00002430 evm_27.TU.AmTr_v1... Cytochrome c oxidase subunit 2 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
ATMG00160 COX2 cytochrome oxidase 2 0.1 Archaeplastida
ATMG01280 ORF291 Cytochrome C oxidase subunit II-like, transmembrane domain 0.11 Archaeplastida
Cre03.g154350 No alias Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01006909001 No alias Cytochrome c oxidase subunit 2 OS=Glycine max 0.07 Archaeplastida
Gb_08948 No alias Cytochrome c oxidase subunit 2 OS=Beta vulgaris... 0.11 Archaeplastida
Gb_17977 No alias Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Gb_34804 No alias Cytochrome c oxidase subunit 2 OS=Glycine max... 0.08 Archaeplastida
MA_10436044g0020 No alias Cytochrome c oxidase subunit 2 OS=Beta vulgaris... 0.03 Archaeplastida
Mp4g18480.1 No alias Cytochrome c oxidase subunit 2 OS=Marchantia polymorpha... 0.06 Archaeplastida
Solyc03g063780.1.1 No alias 60S ribosomal protein L16, mitochondrial OS=Arabidopsis... 0.07 Archaeplastida
Solyc05g045930.1.1 No alias Cytochrome c oxidase subunit 2 OS=Glycine max... 0.03 Archaeplastida
Solyc09g015880.4.1 No alias no hits & (original description: none) 0.08 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
BP GO:0022900 electron transport chain IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR011759 Cyt_c_oxidase_su2_TM_dom 17 103
No external refs found!