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  5. Solyc01g006850.1.1

Solyc01g006850.1.1


Description : Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial OS=Arabidopsis thaliana (sp|q9fng8|pp366_arath : 984.0)


Gene families : OG0010955 (Archaeplastida) Phylogenetic Tree(s): OG0010955_tree ,
OG_05_0010898 (LandPlants) Phylogenetic Tree(s): OG_05_0010898_tree ,
OG_06_0010824 (SeedPlants) Phylogenetic Tree(s): OG_06_0010824_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g006850.1.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AT5G06400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Gb_04017 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_904788g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.09 Archaeplastida
Zm00001e015685_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 256 285
IPR002885 Pentatricopeptide_repeat 922 951
IPR002885 Pentatricopeptide_repeat 537 564
IPR002885 Pentatricopeptide_repeat 1028 1056
IPR002885 Pentatricopeptide_repeat 887 911
IPR002885 Pentatricopeptide_repeat 431 459
IPR002885 Pentatricopeptide_repeat 746 775
IPR002885 Pentatricopeptide_repeat 396 424
IPR002885 Pentatricopeptide_repeat 463 506
IPR002885 Pentatricopeptide_repeat 779 826
IPR002885 Pentatricopeptide_repeat 953 1001
IPR002885 Pentatricopeptide_repeat 287 336
No external refs found!