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  5. Solyc01g006910.4.1

Solyc01g006910.4.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000593 (LandPlants) Phylogenetic Tree(s): OG_05_0000593_tree ,
OG_06_0000328 (SeedPlants) Phylogenetic Tree(s): OG_06_0000328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g006910.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00263220 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00008p00185200 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00008p00200880 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
AMTR_s00019p00149380 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
AMTR_s00021p00161170 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AT1G04360 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT1G49200 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT1G49210 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT1G53010 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT1G67856 No alias RING/U-box superfamily protein 0.09 Archaeplastida
AT1G72220 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G17730 NIP2 NEP-interacting protein 2 0.03 Archaeplastida
AT2G34000 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT2G37580 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G42360 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G20395 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT3G61550 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT4G00305 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT4G11370 RHA1A RING-H2 finger A1A 0.05 Archaeplastida
AT4G15975 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT4G24015 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G38140 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G27420 ATL31, CNI1 carbon/nitrogen insensitive 1 0.02 Archaeplastida
AT5G41440 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G58580 ATL63, TL63 TOXICOS EN LEVADURA 63 0.04 Archaeplastida
AT5G66070 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Cpa|evm.model.tig00020563.21 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Cpa|evm.model.tig00020943.22 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Cre01.g009101 No alias No description available 0.03 Archaeplastida
GSVIVT01000538001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida
GSVIVT01008754001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01008756001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01009096001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01009098001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01012015001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01012018001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01012020001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01012022001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01015682001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01022306001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01026703001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
GSVIVT01026978001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01027769001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01032684001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_02533 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_04301 No alias no hits & (original description: none) 0.06 Archaeplastida
Gb_05004 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.03 Archaeplastida
Gb_05005 No alias E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis... 0.03 Archaeplastida
Gb_14775 No alias RING-H2 finger protein ATL78 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_14777 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_23066 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_28973 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.03 Archaeplastida
Gb_28980 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_35043 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_41385 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os01g11500.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os01g11520.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os01g53500.1 No alias RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.06 Archaeplastida
LOC_Os01g55110.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os02g35347.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g35365.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g37450.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g43120.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os02g45710.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os02g45780.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os03g05570.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os03g44636.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os03g57410.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os04g16970.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os04g37740.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os05g15170.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os05g39260.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os05g45060.1 No alias RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os06g08820.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os06g11450.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os06g16060.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os06g34610.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os06g50370.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os07g34180.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os08g44950.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os09g36500.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os09g37050.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os12g02220.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10021g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_10208579g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10429091g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_10435495g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_114175g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_15116g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_17249g0010 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.03 Archaeplastida
MA_17390g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_181940g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_214717g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_25345g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_26001g0020 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_2679g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_308999g0020 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_31736g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_377006g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_391590g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_43543g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_462422g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_5319g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_634100g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_6931619g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_7553g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_8693914g0010 No alias RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_9764263g0010 No alias RING-H2 finger protein ATL67 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Mp5g08270.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Pp3c13_4710V3.1 No alias TOXICOS EN LEVADURA 2 0.05 Archaeplastida
Pp3c20_11600V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c23_1651V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c26_11650V3.1 No alias TOXICOS EN LEVADURA 2 0.04 Archaeplastida
Pp3c4_30240V3.1 No alias TOXICOS EN LEVADURA 2 0.03 Archaeplastida
Pp3c6_19030V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Smo441685 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Smo96681 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
Solyc01g105620.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc01g109200.4.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Solyc03g083460.3.1 No alias RING-H2 finger protein ATL22 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc03g114190.1.1 No alias RING-H2 finger protein ATL56 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc03g123680.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc04g009780.1.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.05 Archaeplastida
Solyc05g010170.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc05g010175.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc06g061250.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc07g053420.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc09g075320.1.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc10g011880.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc10g081780.3.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.05 Archaeplastida
Solyc11g005290.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc11g066510.3.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc12g006230.3.1 No alias ubiquitin protein ligase (XERICO) 0.05 Archaeplastida
Solyc12g087840.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc12g087860.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc12g094690.1.1 No alias RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e002272_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e007129_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e007956_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e008560_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e009988_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e010787_P001 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e013809_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e014286_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e014709_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e014764_P001 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e015470_P001 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Zm00001e015805_P001 No alias NEP1-interacting protein-like 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e015905_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e016474_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e017509_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e017960_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e018028_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e021729_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e022742_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e023234_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e023585_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e023723_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e023908_P006 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e026906_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e029032_P001 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Zm00001e030930_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e032186_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e034025_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e034421_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e035560_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e037108_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e041385_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e041409_P001 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 115 158
No external refs found!