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  5. Solyc01g008000.3.1

Solyc01g008000.3.1


Description : ARF-GTPase


Gene families : OG0000310 (Archaeplastida) Phylogenetic Tree(s): OG0000310_tree ,
OG_05_0000213 (LandPlants) Phylogenetic Tree(s): OG_05_0000213_tree ,
OG_06_0000536 (SeedPlants) Phylogenetic Tree(s): OG_06_0000536_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g008000.3.1
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AT1G23490 ATARF1, ARF1,... ADP-ribosylation factor 1 0.03 Archaeplastida
AT3G03120 ATARFB1C, ARFB1C ADP-ribosylation factor B1C 0.02 Archaeplastida
AT3G62290 ARFA1E, ATARFA1E ADP-ribosylation factor A1E 0.03 Archaeplastida
AT5G14670 ATARFA1B, ARFA1B ADP-ribosylation factor A1B 0.02 Archaeplastida
Cpa|evm.model.tig00021127.129 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 Archaeplastida
Cre12.g486250 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 Archaeplastida
LOC_Os02g47110.2 No alias ARF-GTPase 0.05 Archaeplastida
LOC_Os05g41060.1 No alias ARF-GTPase 0.1 Archaeplastida
MA_4349g0020 No alias ARF-GTPase 0.03 Archaeplastida
MA_7293641g0010 No alias ADP-ribosylation factor 1 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Mp3g13920.1 No alias ARF-GTPase 0.02 Archaeplastida
Mp8g07320.1 No alias ARF-GTPase 0.07 Archaeplastida
Pp3c10_20740V3.1 No alias ADP-ribosylation factor A1E 0.02 Archaeplastida
Pp3c12_14945V3.1 No alias ADP-ribosylation factor A1E 0.04 Archaeplastida
Pp3c4_20580V3.1 No alias ADP-ribosylation factor A1E 0.03 Archaeplastida
Solyc01g100860.3.1 No alias ARF-GTPase 0.04 Archaeplastida
Solyc01g100870.3.1 No alias ARF-GTPase 0.04 Archaeplastida
Zm00001e011790_P001 No alias ARF-GTPase 0.03 Archaeplastida
Zm00001e019488_P002 No alias ARF-GTPase 0.05 Archaeplastida
Zm00001e033127_P003 No alias ARF-GTPase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004478 methionine adenosyltransferase activity IEP Neighborhood
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Neighborhood
BP GO:0006732 coenzyme metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0009108 coenzyme biosynthetic process IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0046500 S-adenosylmethionine metabolic process IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051188 cofactor biosynthetic process IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
InterPro domains Description Start Stop
IPR006689 Small_GTPase_ARF/SAR 5 177
No external refs found!