Solyc01g008080.3.1

Description : component RPS27 of SSU proteome

Gene families : OG0001943 (Archaeplastida) Phylogenetic Tree(s): OG0001943_tree ,
OG_05_0003066 (LandPlants) Phylogenetic Tree(s): OG_05_0003066_tree ,
OG_06_0004957 (SeedPlants) Phylogenetic Tree(s): OG_06_0004957_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g008080.3.1
Cluster	HCCA: Cluster_185

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00049p00194290	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
AT2G45710	No alias	Zinc-binding ribosomal protein family protein	0.06	Archaeplastida
AT3G61110	ARS27A, RS27A	ribosomal protein S27	0.06	Archaeplastida
AT5G47930	No alias	Zinc-binding ribosomal protein family protein	0.05	Archaeplastida
Cpa\|evm.model.tig00001299.2	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	Archaeplastida
Cre12.g529400	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
GSVIVT01001113001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	Archaeplastida
GSVIVT01032964001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	Archaeplastida
Mp5g09510.1	No alias	component RPS27 of SSU proteome	0.04	Archaeplastida
Pp3c18_2100V3.1	No alias	ribosomal protein S27	0.03	Archaeplastida
Pp3c1_15840V3.1	No alias	ribosomal protein S27	0.1	Archaeplastida
Pp3c22_18310V3.1	No alias	ribosomal protein S27	0.08	Archaeplastida
Pp3c2_20540V3.1	No alias	ribosomal protein S27	0.06	Archaeplastida
Smo163947	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0031072	heat shock protein binding	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000592	Ribosomal_S27e	30	84

External Links

No external refs found!

Solyc01g008080.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation