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  5. Solyc01g008370.3.1

Solyc01g008370.3.1


Description : regulatory component RPN8 of 26S proteasome


Gene families : OG0005523 (Archaeplastida) Phylogenetic Tree(s): OG0005523_tree ,
OG_05_0006290 (LandPlants) Phylogenetic Tree(s): OG_05_0006290_tree ,
OG_06_0006780 (SeedPlants) Phylogenetic Tree(s): OG_06_0006780_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g008370.3.1
Cluster HCCA: Cluster_284

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000403.78 No alias Protein degradation.26S proteasome.regulatory... 0.02 Archaeplastida
Cre06.g278256 No alias Protein degradation.26S proteasome.regulatory... 0.06 Archaeplastida
Gb_05727 No alias regulatory component RPN8 of 26S proteasome 0.04 Archaeplastida
Mp1g16680.1 No alias regulatory component RPN8 of 26S proteasome 0.03 Archaeplastida
Zm00001e006655_P003 No alias regulatory component RPN8 of 26S proteasome 0.04 Archaeplastida
Zm00001e041848_P003 No alias regulatory component RPN8 of 26S proteasome 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000555 JAMM/MPN+_dom 15 124
IPR024969 Rpn11/EIF3F_C 174 285
No external refs found!