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  5. Solyc01g009090.3.1

Solyc01g009090.3.1


Description : C2H2 zinc finger transcription factor. component SERRATE of DCL1-HYL1 miRNA biogenesis complex


Gene families : OG0002437 (Archaeplastida) Phylogenetic Tree(s): OG0002437_tree ,
OG_05_0003524 (LandPlants) Phylogenetic Tree(s): OG_05_0003524_tree ,
OG_06_0004189 (SeedPlants) Phylogenetic Tree(s): OG_06_0004189_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g009090.3.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
Cre13.g575900 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01027348001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.07 Archaeplastida
Gb_07578 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.01 Archaeplastida
LOC_Os06g48530.1 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.03 Archaeplastida
LOC_Os08g40560.1 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.03 Archaeplastida
MA_10426519g0010 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.02 Archaeplastida
Mp1g23090.1 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.04 Archaeplastida
Pp3c25_7680V3.1 No alias C2H2 zinc-finger protein SERRATE (SE) 0.04 Archaeplastida
Zm00001e003610_P002 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.03 Archaeplastida
Zm00001e013155_P002 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.04 Archaeplastida
Zm00001e021924_P001 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.02 Archaeplastida
Zm00001e030244_P001 No alias C2H2 zinc finger transcription factor. component SERRATE... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007042 Arsenite-R_2 451 652
IPR021933 DUF3546 215 296
No external refs found!