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  5. Solyc01g009190.3.1

Solyc01g009190.3.1


Description : Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp. japonica (sp|q5n8z0|drb1_orysj : 118.0)


Gene families : OG0000434 (Archaeplastida) Phylogenetic Tree(s): OG0000434_tree ,
OG_05_0000373 (LandPlants) Phylogenetic Tree(s): OG_05_0000373_tree ,
OG_06_0000829 (SeedPlants) Phylogenetic Tree(s): OG_06_0000829_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g009190.3.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00199170 evm_27.TU.AmTr_v1... Double-stranded RNA-binding protein 2 OS=Oryza sativa... 0.03 Archaeplastida
AT3G26932 DRB3 dsRNA-binding protein 3 0.04 Archaeplastida
LOC_Os09g33460.1 No alias Double-stranded RNA-binding protein 5 OS=Oryza sativa... 0.02 Archaeplastida
MA_10152247g0010 No alias Double-stranded RNA-binding protein 5 OS=Oryza sativa... 0.03 Archaeplastida
MA_10192333g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_10370929g0010 No alias No annotation 0.02 Archaeplastida
MA_10437208g0010 No alias Double-stranded RNA-binding protein 5 OS=Oryza sativa... 0.02 Archaeplastida
MA_693782g0010 No alias component HYL1 of DCL1-HYL1 miRNA biogenesis complex 0.04 Archaeplastida
MA_79750g0010 No alias Double-stranded RNA-binding protein 5 OS=Oryza sativa... 0.03 Archaeplastida
Smo71410 No alias Double-stranded RNA-binding protein 2 OS=Oryza sativa... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
InterPro domains Description Start Stop
IPR014720 dsRBD_dom 214 277
IPR014720 dsRBD_dom 2 64
No external refs found!