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  5. AMTR_s00021p00158020

AMTR_s00021p00158020 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.111

Description : RNA biosynthesis.transcriptional activation.TCP transcription factor


Gene families : OG0000332 (Archaeplastida) Phylogenetic Tree(s): OG0000332_tree ,
OG_05_0000167 (LandPlants) Phylogenetic Tree(s): OG_05_0000167_tree ,
OG_06_0000105 (SeedPlants) Phylogenetic Tree(s): OG_06_0000105_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00158020
Cluster HCCA: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
AT1G68800 TCP12, BRC2 TCP domain protein 12 0.06 Archaeplastida
GSVIVT01008109001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.06 Archaeplastida
GSVIVT01014236001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.05 Archaeplastida
GSVIVT01021528001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.03 Archaeplastida
GSVIVT01036449001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.04 Archaeplastida
Gb_17863 No alias transcription factor (TCP) 0.02 Archaeplastida
Gb_18221 No alias transcription factor (TCP) 0.03 Archaeplastida
Gb_38379 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os01g11550.1 No alias transcription factor (TCP) 0.05 Archaeplastida
LOC_Os01g55750.1 No alias transcription factor (TCP) 0.09 Archaeplastida
LOC_Os03g49880.1 No alias transcription factor (TCP) 0.03 Archaeplastida
LOC_Os05g43760.1 No alias transcription factor (TCP) 0.03 Archaeplastida
LOC_Os07g05720.1 No alias transcription factor (TCP) 0.03 Archaeplastida
LOC_Os12g42190.1 No alias transcription factor (TCP) 0.04 Archaeplastida
MA_101752g0020 No alias transcription factor (TCP) 0.02 Archaeplastida
MA_189502g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_35349g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_37369g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_4774g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_78665g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc02g077250.2.1 No alias transcription factor (TCP) 0.05 Archaeplastida
Solyc02g089020.2.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc03g045030.2.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc05g009900.3.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc06g069240.2.1 No alias transcription factor (TCP) 0.04 Archaeplastida
Zm00001e005407_P001 No alias transcription factor (TCP) 0.04 Archaeplastida
Zm00001e005909_P001 No alias transcription factor (TCP) 0.05 Archaeplastida
Zm00001e009811_P001 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e011516_P001 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e011911_P001 No alias transcription factor (TCP) 0.04 Archaeplastida
Zm00001e032122_P001 No alias transcription factor (TCP) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001505 regulation of neurotransmitter levels IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004047 aminomethyltransferase activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006544 glycine metabolic process IEP Neighborhood
BP GO:0006546 glycine catabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006787 porphyrin-containing compound catabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009063 cellular amino acid catabolic process IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009071 serine family amino acid catabolic process IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
BP GO:0015995 chlorophyll biosynthetic process IEP Neighborhood
BP GO:0015996 chlorophyll catabolic process IEP Neighborhood
BP GO:0016054 organic acid catabolic process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
MF GO:0019203 carbohydrate phosphatase activity IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0033015 tetrapyrrole catabolic process IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity IEP Neighborhood
BP GO:0042133 neurotransmitter metabolic process IEP Neighborhood
BP GO:0042135 neurotransmitter catabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
BP GO:0046149 pigment catabolic process IEP Neighborhood
BP GO:0046395 carboxylic acid catabolic process IEP Neighborhood
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0047746 chlorophyllase activity IEP Neighborhood
MF GO:0050308 sugar-phosphatase activity IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901606 alpha-amino acid catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005333 Transcription_factor_TCP 25 134
No external refs found!