Solyc01g017300.2.1

Description : Photosystem I P700 chlorophyll a apoprotein A1 OS=Nicotiana tabacum (sp|p06405|psaa_tobac : 196.0)

Gene families : OG0000489 (Archaeplastida) Phylogenetic Tree(s): OG0000489_tree ,
OG_05_0000306 (LandPlants) Phylogenetic Tree(s): OG_05_0000306_tree ,
OG_06_0000861 (SeedPlants) Phylogenetic Tree(s): OG_06_0000861_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g017300.2.1
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00023p00250910	No alias	Photosystem I P700 chlorophyll a apoprotein A1...	0.05	Archaeplastida
AMTR_s00063p00185460	No alias	Photosystem I P700 chlorophyll a apoprotein A1...	0.05	Archaeplastida
AMTR_s00076p00111250	No alias	Photosystem I P700 chlorophyll a apoprotein A2...	0.05	Archaeplastida
AMTR_s00334p00015340	No alias	Photosystem I P700 chlorophyll a apoprotein A1...	0.05	Archaeplastida
AMTR_s01196p00002960	No alias	Photosystem I P700 chlorophyll a apoprotein A2 OS=Morus indica	0.05	Archaeplastida
ATCG00340	PSAB	Photosystem I, PsaA/PsaB protein	0.2	Archaeplastida
ATCG00350	PSAA	Photosystem I, PsaA/PsaB protein	0.2	Archaeplastida
Gb_09027	No alias	Photosystem I P700 chlorophyll a apoprotein A2 OS=Cycas...	0.05	Archaeplastida
Gb_11361	No alias	Photosystem I P700 chlorophyll a apoprotein A1...	0.05	Archaeplastida
Gb_11944	No alias	Photosystem I P700 chlorophyll a apoprotein A2 OS=Cycas...	0.05	Archaeplastida
Gb_41658	No alias	Photosystem I P700 chlorophyll a apoprotein A1...	0.03	Archaeplastida
LOC_Os01g57962.1	No alias	apoprotein PsaB of PS-I complex	0.12	Archaeplastida
LOC_Os04g16760.1	No alias	apoprotein PsaA of PS-I complex	0.24	Archaeplastida
LOC_Os05g01675.1	No alias	apoprotein PsaA of PS-I complex	0.22	Archaeplastida
LOC_Os10g21248.1	No alias	apoprotein PsaB of PS-I complex	0.1	Archaeplastida
LOC_Os10g21250.1	No alias	apoprotein PsaA of PS-I complex	0.05	Archaeplastida
LOC_Os10g38229.1	No alias	apoprotein PsaA of PS-I complex	0.09	Archaeplastida
LOC_Os10g38234.1	No alias	apoprotein PsaB of PS-I complex	0.17	Archaeplastida
MA_173626g0010	No alias	Photosystem I P700 chlorophyll a apoprotein A2 OS=Pinus...	0.04	Archaeplastida
Pp3c20_4030V3.1	No alias	Photosystem I, PsaA/PsaB protein	0.02	Archaeplastida
Smo236842	No alias	Photosynthesis.photophosphorylation.photosystem I.PS-I...	0.08	Archaeplastida
Solyc12g035730.1.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e042056_P001	No alias	apoprotein PsaB of PS-I complex	0.05	Archaeplastida
Zm00001e042151_P001	No alias	apoprotein PsaB of PS-I complex	0.05	Archaeplastida
Zm00001e042235_P001	No alias	apoprotein PsaB of PS-I complex	0.05	Archaeplastida
Zm00001e042373_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009579	thylakoid	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	IEA	Interproscan
CC	GO:0016021	integral component of membrane	IEA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0003954	NADH dehydrogenase activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Neighborhood
CC	GO:0009521	photosystem	IEP	Neighborhood
CC	GO:0009522	photosystem I	IEP	Neighborhood
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0031647	regulation of protein stability	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
MF	GO:0042301	phosphate ion binding	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Neighborhood
BP	GO:0050821	protein stabilization	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001280	PSI_PsaA/B	189	277
IPR007120	DNA-dir_RNAP_su2_dom	122	167

External Links

No external refs found!

Solyc01g017300.2.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation