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  5. Solyc01g050040.4.1

Solyc01g050040.4.1


Description : E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica (sp|q6avn2|sirp1_orysj : 175.0)


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0007405 (LandPlants) Phylogenetic Tree(s): OG_05_0007405_tree ,
OG_06_0003946 (SeedPlants) Phylogenetic Tree(s): OG_06_0003946_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g050040.4.1
Cluster HCCA: Cluster_258

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00258330 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01019972001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
Gb_26865 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os03g16480.1 No alias E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e012628_P001 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 Archaeplastida
Zm00001e038199_P001 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 89 131
No external refs found!