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  5. Solyc01g056575.1.1

Solyc01g056575.1.1


Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 153.0)


Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0001291 (LandPlants) Phylogenetic Tree(s): OG_05_0001291_tree ,
OG_06_0001454 (SeedPlants) Phylogenetic Tree(s): OG_06_0001454_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g056575.1.1
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
ATMG00860 ORF158 DNA/RNA polymerases superfamily protein 0.04 Archaeplastida
Gb_25344 No alias Uncharacterized mitochondrial protein AtMg00860... 0.05 Archaeplastida
Solyc01g014055.1.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc01g058003.1.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc04g049925.1.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc08g041685.1.1 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
Solyc09g055185.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc09g150114.1.1 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
Solyc11g020827.1.1 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.06 Archaeplastida
Solyc12g040285.1.1 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000077 DNA damage checkpoint IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
CC GO:0030896 checkpoint clamp complex IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0045786 negative regulation of cell cycle IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
InterPro domains Description Start Stop
IPR000477 RT_dom 2 111
No external refs found!